Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M17
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    52   2e-08
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    37   6e-04
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    33   0.011
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    31   0.043
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    29   0.098
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    29   0.17 
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    28   0.30 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   4.9  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    24   4.9  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             23   6.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    23   8.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    23   8.5  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   8.5  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    23   8.5  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 51.6 bits (118), Expect = 2e-08
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +2

Query: 188 LRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
           L GIDA+KSHI A + +A I+RTSLGPRGLDK
Sbjct: 30  LHGIDAVKSHILATKTVANIVRTSLGPRGLDK 61



 Score = 29.5 bits (63), Expect = 0.098
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 133 DEYGRPFIIIKDREKQSRL 189
           D+ G PFI+++D+EK+ RL
Sbjct: 12  DDQGNPFILVRDQEKKRRL 30


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 36.7 bits (81), Expect = 6e-04
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +2

Query: 212 SHIQAARQIAGILRTSLGPRGLDK 283
           S+I AAR +A  +RTSLGP+G+DK
Sbjct: 23  SNIMAARSVADAIRTSLGPKGMDK 46


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 32.7 bits (71), Expect = 0.011
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +2

Query: 194 GIDALKSHIQAARQIAGILRTSLGPRGLDK 283
           G  A  S+IQAA+ +A ++RT LGPR + K
Sbjct: 17  GHKAQMSNIQAAKAVADVIRTCLGPRAMLK 46


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 30.7 bits (66), Expect = 0.043
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 188 LRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
           + G D    ++ A   IA ++++SLGP GLDK
Sbjct: 17  ISGEDVRNQNVLATTAIANVVKSSLGPVGLDK 48


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 29.5 bits (63), Expect = 0.098
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 188 LRGI-DALKSHIQAARQIAGILRTSLGPRGLDK 283
           ++G+ DA+  +  A R+++ I RTSLGP G +K
Sbjct: 21  MQGVEDAVIRNCNAIRELSEITRTSLGPNGKNK 53


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 185 DLRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
           D +G   L S+I A   +   +RT+LGP G DK
Sbjct: 19  DSQGRGQLLSNINACVAVQDTIRTTLGPLGADK 51


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 0.30
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 176 SRVDLRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
           S +  RG +A  S    A  +  +++++LGP+G+DK
Sbjct: 12  SGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDK 47


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 230  ARLGYVTLGHQYRVSLLCFSRSF-IIING 147
            A L  V  GH+YR++ +   ++F II++G
Sbjct: 2332 ASLKRVLYGHRYRITCVTVCKAFSIIVSG 2360


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 221 GYVTLGHQYRVSLLCFSRSFIIINGRPYS 135
           G    GH Y       SRS + ++GRPY+
Sbjct: 110 GVKRFGHAYCPLDEALSRSVVDLSGRPYA 138


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 139 TRQRPPLQGTWPFSKYNHL 83
           T+ +PP+ GTW   + NHL
Sbjct: 408 TQPKPPVMGTWA-KEPNHL 425


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 229 ATNRRYPPHVPWSE 270
           ++N + PP +PWSE
Sbjct: 830 SSNPKEPPFLPWSE 843


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 189 YAVLMP*SHISKPRDKSPVSSARPLVRGVSI 281
           Y V +   H+SK  DK+P+S    L+  V++
Sbjct: 441 YLVSVIGKHVSKLSDKTPLSIVSELLNLVTV 471


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 273 PLGPRDVRRIPAICRAAW 220
           PL  R+  R+P +C A W
Sbjct: 103 PLKHRNNERLPYLCNAIW 120


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 86  LRKH*MKIDLKFENFAIQI 30
           L KH  +ID+KFE+ +I +
Sbjct: 268 LNKHPHEIDVKFEDISISL 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,672
Number of Sequences: 5004
Number of extensions: 22755
Number of successful extensions: 76
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)