Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M17
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 47 3e-06
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 37 0.002
10_08_0620 - 19321612-19323237 35 0.009
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 35 0.012
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 31 0.11
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 31 0.11
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 30 0.33
12_01_0622 + 5124213-5125292,5126820-5128685 29 0.58
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 29 0.76
09_06_0023 - 20299435-20299528,20299666-20299757,20299873-202999... 26 4.1
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 26 4.1
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 26 5.4
12_02_0357 + 17941898-17943691 25 7.1
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 25 7.1
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 25 7.1
05_04_0132 + 18303925-18307164 25 7.1
02_05_0795 - 31792231-31794780 25 7.1
07_03_0541 + 19254455-19254666,19255053-19255207,19255420-192554... 25 9.4
06_01_0001 - 18456-18521,18692-18874,19046-19153,19337-19396,197... 25 9.4
03_06_0459 + 34085134-34086269,34086471-34086717 25 9.4
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +2
Query: 164 KTERSRVDLRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
+ + + LRG+DA K++I A + +A ILRTSLGP+G+DK
Sbjct: 16 REQEKKSRLRGLDAQKANIAAGKAVARILRTSLGPKGMDK 55
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/23 (69%), Positives = 23/23 (100%)
Frame = +1
Query: 121 AVAFDEYGRPFIIIKDREKQSRL 189
A+AFDE+GRPFII++++EK+SRL
Sbjct: 2 ALAFDEFGRPFIILREQEKKSRL 24
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 164 KTERSRVDLRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
KTE R D +I AAR +A +RTSLGPRG+DK
Sbjct: 14 KTETYTDTKRRDDVRGLNIAAARAVADAVRTSLGPRGMDK 53
>10_08_0620 - 19321612-19323237
Length = 541
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +2
Query: 164 KTERSRVDLRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
KTE R D +I A R +A RTSLGPRG+DK
Sbjct: 14 KTETYTDTKRRDDVRGLNIAAGRAVAAAARTSLGPRGMDK 53
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +2
Query: 188 LRGID-ALKSHIQAARQIAGILRTSLGPRGLDK 283
L G+D A+ +I A R+++ I RTSLGP G++K
Sbjct: 17 LSGLDEAVLKNIDACRELSAITRTSLGPNGMNK 49
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 212 SHIQAARQIAGILRTSLGPRGLDK 283
S+I A +A +RT+LGPRG+DK
Sbjct: 27 SNINACTVVADTVRTTLGPRGMDK 50
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 212 SHIQAARQIAGILRTSLGPRGLDK 283
++IQAA+ +A I+RT+LGPR + K
Sbjct: 25 ANIQAAKAVADIIRTTLGPRSMLK 48
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +2
Query: 212 SHIQAARQIAGILRTSLGPRGLDK 283
++IQAA+ +A I+RT+LGP+ + K
Sbjct: 25 ANIQAAKAVADIIRTTLGPQSMLK 48
>12_01_0622 + 5124213-5125292,5126820-5128685
Length = 981
Score = 29.1 bits (62), Expect = 0.58
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -3
Query: 135 VKGHRSREHGHFQNIIT*KTLDENR-FKIRELC--YPNSILQTLVPN 4
+K R R HG +II K++DEN+ F I++ C P S ++ LV N
Sbjct: 507 LKVDRCRVHGMMLHIILSKSIDENQLFVIKKHCNEVPQSKIRHLVVN 553
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 28.7 bits (61), Expect = 0.76
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 182 VDLRGIDALKSHIQAARQIAGILRTSLGPRGLDK 283
V+ +G A + A IA +++T+LGP+G+DK
Sbjct: 10 VEEKGERARMAAFIGAMAIADLVKTTLGPKGMDK 43
>09_06_0023 -
20299435-20299528,20299666-20299757,20299873-20299955,
20300066-20300147,20300235-20300462,20300646-20300747,
20300834-20300969,20301105-20301514
Length = 408
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 181 SRLTRY*CPKVTYPSRATNRRYPPHVPWSEGSR 279
S +T+Y C K+ + S AT P P E S+
Sbjct: 173 SAMTKYGCKKIVFSSSATVYGQPEKTPCVEDSK 205
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 264 PRDVRRIPAICRAAWICDF 208
P D RR CR+ WICDF
Sbjct: 128 PWDTRRCG--CRSGWICDF 144
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 81 KTLDENRF-KIRELCYPNSILQTLVPN 4
KTLD N + K LCY + LQ +VPN
Sbjct: 296 KTLDINFYDKTNFLCYVITKLQNIVPN 322
>12_02_0357 + 17941898-17943691
Length = 597
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 221 GYVTLGHQYRVSLLCFSRSFIIING 147
G G + ++CF RSF+II G
Sbjct: 503 GVAVAGDKICKGVMCFKRSFLIITG 527
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 122 RWPLTSMDVHL*L*KTERSRVDLRGIDA---LKSHIQ 223
RWP S L L K S D++G+D SHIQ
Sbjct: 95 RWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQ 131
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/16 (50%), Positives = 15/16 (93%)
Frame = +2
Query: 236 IAGILRTSLGPRGLDK 283
I+ +++T+LGP+G+DK
Sbjct: 29 ISDLVKTTLGPKGMDK 44
>05_04_0132 + 18303925-18307164
Length = 1079
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 284 AYRDPSDQGTCGGYRRFVAR 225
AY DP++ TC G R +AR
Sbjct: 959 AYLDPTESMTCPGNRLIIAR 978
>02_05_0795 - 31792231-31794780
Length = 849
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 202 CPKVTYPSRATNRRYP 249
C +V + ATNRRYP
Sbjct: 680 CDRVFFAGEATNRRYP 695
>07_03_0541 +
19254455-19254666,19255053-19255207,19255420-19255496,
19255572-19255679
Length = 183
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 173 RSRVDLRGIDALKSHIQAARQIAGILRTSL 262
RS VDL+ + ALK+ IQ R LR+ +
Sbjct: 45 RSAVDLQQVAALKAEIQEIRHETQHLRSGI 74
>06_01_0001 -
18456-18521,18692-18874,19046-19153,19337-19396,
19755-19937,20109-20291,20816-20998,21170-21352,
21524-21581,21878-21935,22586-22643,22938-22995,
23292-23349,23998-24007
Length = 482
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 282 LSRPLGPRDVRRIPAICRAAW-ICDFRASIPRKSTLLL 172
L GP D+RR A+W +C RA +P +T L+
Sbjct: 261 LKTSCGPSDIRRFAETTAASWPMC--RARLPTLTTRLV 296
>03_06_0459 + 34085134-34086269,34086471-34086717
Length = 460
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 187 LTRY*CPKVTYPSRATNRRYPPHVPWS 267
+TRY + TYP R Y PH P S
Sbjct: 276 VTRYAWVEETYPRECLERGYFPHGPAS 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,168,062
Number of Sequences: 37544
Number of extensions: 146736
Number of successful extensions: 425
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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