Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M17
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   0.73 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   5.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   5.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   5.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   5.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   9.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   9.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 0.73
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 220 PSRATNRRYPPHVPWSEGSR 279
           P +  NR Y   VP+S G R
Sbjct: 467 PEKTANRHYYAFVPFSAGPR 486


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 4   IWHEGLQDRIWIAKFSNFKSI 66
           +W+    D++WI  + N K I
Sbjct: 595 LWYVPSLDQVWILNWRNQKDI 615


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 34  WIAKFSNFKSIFI*CFLSDYILKMAMFPGAV 126
           W  K   F S+F    L+  +++    PGA+
Sbjct: 230 WTGKVVYFTSLFPYALLTILLIRGLTLPGAM 260


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 34  WIAKFSNFKSIFI*CFLSDYILKMAMFPGAV 126
           W  K   F S+F    L+  +++    PGA+
Sbjct: 283 WTGKVVYFTSLFPYALLTILLIRGLTLPGAM 313


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 188 SLLCFSRSFIII 153
           SL CF+R F II
Sbjct: 6   SLYCFARLFFII 17


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -3

Query: 237 ICRAAWICDFR 205
           IC   WIC+ R
Sbjct: 373 ICSNGWICEHR 383


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 141 ILVKGHRSREHGHFQNI 91
           IL+K      H H QNI
Sbjct: 46  ILIKDLFDNVHNHIQNI 62


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 141 ILVKGHRSREHGHFQNI 91
           IL+K      H H QNI
Sbjct: 29  ILIKDLFDNVHNHIQNI 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,005
Number of Sequences: 438
Number of extensions: 1824
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)