Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M16
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   160   4e-41
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   160   4e-41
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   0.63 
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   1.1  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   1.1  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   1.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   2.5  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   2.5  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    24   3.4  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    24   4.4  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   4.4  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    23   5.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    23   7.8  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  160 bits (388), Expect = 4e-41
 Identities = 70/90 (77%), Positives = 79/90 (87%)
 Frame = +1

Query: 4   RRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYFQLSS 183
           RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EY Q++S
Sbjct: 3   RRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITS 62

Query: 184 EALEAGRICCNKYLVKNCGKDQFHIRMRLH 273
           EALEA RIC NKYLVK  GKD FH+R+R H
Sbjct: 63  EALEAARICANKYLVKIGGKDSFHLRVRAH 92


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  160 bits (388), Expect = 4e-41
 Identities = 70/90 (77%), Positives = 79/90 (87%)
 Frame = +1

Query: 4   RRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYFQLSS 183
           RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EY Q++S
Sbjct: 3   RRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITS 62

Query: 184 EALEAGRICCNKYLVKNCGKDQFHIRMRLH 273
           EALEA RIC NKYLVK  GKD FH+R+R H
Sbjct: 63  EALEAARICANKYLVKIGGKDSFHLRVRAH 92


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 79  DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYFQLSSEALEA 198
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +1

Query: 55  SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE----YFQLSSE 186
           S FC   PDPK       K  A  DD P +  H+ S++    YF+  SE
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSNDKDFAYFEDKSE 132


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 22  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYFQLSSEALEA 198
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S +   ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 199 G 201
           G
Sbjct: 94  G 94


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 138 WEVIHCRSLFAQVENTDLWVRHTPT 64
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 163 EYFQLSSEALEAGRICCNKYLVKNCGKD 246
           EY++LSSEAL   +   N+Y   N   D
Sbjct: 454 EYYRLSSEALSIFKAYKNRYSFVNTACD 481


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 104 WAKRERQWMTSH 139
           W +RERQW+  H
Sbjct: 91  WLRRERQWLQRH 102


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 178 SAESTHQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPD-KTEI 53
           + + T + L   I+ +H L+ +   +R+ GSL    PD KT++
Sbjct: 129 ATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQV 171


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 73  VPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYFQ 174
           VP   I  +D        DD  LC+H     YF+
Sbjct: 304 VPLKAINAYDFDDNIWGYDDGDLCIHFAGCNYFK 337


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 193 PAPQNSAESTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 74
           P P +S+    Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 94  IFDLGKKRATVDDFPLCVH 150
           IFD     AT+DD   CVH
Sbjct: 143 IFDFLTLSATIDDTIFCVH 161


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 198 CFQRLRTQLKVLI 160
           C +R+R+Q+KVLI
Sbjct: 526 CLRRIRSQIKVLI 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,150,054
Number of Sequences: 5004
Number of extensions: 20682
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)