Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M16
(273 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 153 2e-38
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 144 9e-36
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 133 2e-32
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.17
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 28 0.89
07_03_0770 - 21375099-21375122,21375321-21375448,21375541-213756... 27 2.0
11_06_0643 - 25773250-25773843 27 2.7
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 26 3.6
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 26 3.6
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 26 3.6
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 26 4.7
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 26 4.7
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 26 4.7
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 25 6.3
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 25 6.3
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 25 6.3
05_03_0363 - 12983243-12983304,12983526-12983658 25 6.3
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 25 6.3
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 25 6.3
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 25 6.3
01_05_0535 - 23001864-23005052 25 6.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 153 bits (371), Expect = 2e-38
Identities = 66/91 (72%), Positives = 76/91 (83%)
Frame = +1
Query: 1 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYFQLS 180
GRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E +S
Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVS 61
Query: 181 SEALEAGRICCNKYLVKNCGKDQFHIRMRLH 273
SEALEA RI CNKY+ KN GKD FH+R+R+H
Sbjct: 62 SEALEAARIACNKYMTKNAGKDAFHLRVRVH 92
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 144 bits (349), Expect = 9e-36
Identities = 62/88 (70%), Positives = 72/88 (81%)
Frame = +1
Query: 10 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYFQLSSEA 189
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 190 LEAGRICCNKYLVKNCGKDQFHIRMRLH 273
LEA RI CNKY+ K+ GKD FH+R+ H
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAH 399
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 133 bits (321), Expect = 2e-32
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = +1
Query: 19 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYFQLSSEALEA 198
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 199 GRICCNKYLVKNCGKDQFHIRMRLH 273
RI CNKY+ K+ GKD FH+R+R+H
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVH 88
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 121 TVDDFPLC-VHLVSDEYFQLSSEALEAGRICCNKYLVKNCG 240
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 226 RGTCCNRYGLLPAPQNSAESTHQTLSARIVGSHPLS 119
R CC GL P P S+ + +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>07_03_0770 -
21375099-21375122,21375321-21375448,21375541-21375672,
21377016-21377874
Length = 380
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 262 SGCGTDLYRSSLRGTCCNR 206
+GCGT++ R ++ G CNR
Sbjct: 97 AGCGTNVSRDAVAGPTCNR 115
>11_06_0643 - 25773250-25773843
Length = 197
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 262 SGCGTDLYRSSLRGTCCNRYG 200
S TD++ +S+ CC RYG
Sbjct: 144 SSSSTDVFLNSVSARCCRRYG 164
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 28 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRA 120
+C +PYPK VPD ++ GK +A
Sbjct: 395 FCMYEPYPKGSLEDDVPDTTVQDMLCGKAKA 425
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 253 GTDLYRSSLRGTCCNRYGLLPAPQ 182
G D+ ++L+ C RYGL AP+
Sbjct: 59 GEDVDLNALKSAACRRYGLARAPK 82
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 171 SAEF*GAGSRPYLLQQVPRKELR*RSVPHPDETT 272
SA F G G+R ++++V R+E P PD T
Sbjct: 257 SARFQGVGTRAEIMKEVIRREKEAGITPDPDIDT 290
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 13 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVH 150
A +RYC + + +S+F R P + DL K V + C H
Sbjct: 407 AEIFRYCLDGTHERSKFLRAAA-PSVNEDDLIKLANQVSLYSGCTH 451
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 28 YCKNKPYPKSRFCRGVPDPKIRIFDL--GKKRATVDDFPLCVHLVSD 162
+CK+ P KS + G+P P FD+ GK R ++ L +V+D
Sbjct: 141 HCKDHPRAKSLY--GIPFPYFDTFDVIYGKDRTGREEEELSDEVVAD 185
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 109 KKRATVDDFPLCVHLVSDEYFQLSSEALEAGRICCNKYLVKNCGKDQFH 255
K AT+DD+ + V +EYF L A + ++ G DQFH
Sbjct: 78 KVPATLDDYKRLLVPVIEEYFSTGDVELAASEL-------RSLGSDQFH 119
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 247 DLYRSSLRGTCCNRYGLLPAPQNSAESTHQTLSARIV 137
+ R +L C N Y L AP N + LS++ V
Sbjct: 93 EFVRENLPAVCLNGYSTLLAPANEVLIPQELLSSKTV 129
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 91 RIFDLGKKRATVDDFPL 141
R+ DLGK+RA + D PL
Sbjct: 76 RLEDLGKRRARLQDIPL 92
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 1 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIF 99
GRR R R C+ + P++RF R V D F
Sbjct: 49 GRRGRRPRRACEEEEKPQARFRRVVADNSYSAF 81
>05_03_0363 - 12983243-12983304,12983526-12983658
Length = 64
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 169 STHQTLSARIVGSHPLSLSFCP 104
STH L A V S PL +FCP
Sbjct: 27 STHPALIAVSVASLPLPQNFCP 48
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 46 YPKSRFCRGVPDPKIRIFDLGKKRAT-VDD-FPLCVHLVSDEYF 171
YP + RG DP RI GK AT V+D F L ++ D F
Sbjct: 711 YPFTSSIRGKDDPLTRIVVRGKSMATRVEDLFNLIYCILQDVQF 754
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 4 RRPARCYRYCKNKPYPKSRFCRGVPDPKIR 93
R P++ +RY + P P++R R P P I+
Sbjct: 1026 RAPSQDWRYTPDVPRPRTRGRRRGPSPAIQ 1055
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 135 EVIHCRSLFAQVENTDLWVRHTPTKP 58
+V+HC S + + LW+R P P
Sbjct: 473 DVVHCPSCSSYLHPPRLWLRAAPESP 498
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 271 VVSSGCGTDLYRSSLRGTCCNRYGLL 194
V+ SGC +DLY S + R+G+L
Sbjct: 304 VLKSGCSSDLYVGSALVSAFARHGML 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,721,410
Number of Sequences: 37544
Number of extensions: 144398
Number of successful extensions: 389
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -