Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M14
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 73 1e-14
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.044
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 30 0.10
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 30 0.10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.13
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 28 0.41
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 0.72
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 0.72
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 0.95
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 1.3
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 26 1.3
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 1.7
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 1.7
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 2.2
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 25 2.9
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 2.9
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 3.8
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 24 5.1
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 24 5.1
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 24 5.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 5.1
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 24 6.7
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 24 6.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 24 6.7
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 24 6.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 24 6.7
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 24 6.7
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 24 6.7
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 23 8.8
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 23 8.8
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 72.9 bits (171), Expect = 1e-14
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = +3
Query: 69 MIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTV-IRTQDDIHIDGLNPSAEEADEGTD 245
M++YKDVI+GDE+ SD Y +K +D+++YE + V ++ D+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 246 SSVETGVDIVLNHRLVETCAFGDKKSY 326
ET ++V + RL T +F DKKSY
Sbjct: 60 EGTETVNNLVYSFRLSPT-SF-DKKSY 84
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.044
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -3
Query: 319 FLSPNAHVSTSL*FSTMSTPVSTLESVPSSASSAEGFNPSMWISSCVLITVLPVTS*ITS 140
F S + ++ L S+ STP+S P+S ++ GFN + + + + T L +S S
Sbjct: 682 FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAYPS 741
Query: 139 SINLTL-YVSENISSPVI 89
S + T +S ++S +I
Sbjct: 742 SGSSTFSRLSSTLTSSII 759
Score = 29.9 bits (64), Expect = 0.10
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = -3
Query: 319 FLSPNAHVSTSL*FSTMSTPVSTLESVPSSASSAEGFNPSMWI----SSCVL--ITVLPV 158
F S + ++ L S+ STP S VP+S ++ GFN + + +S L TV P
Sbjct: 651 FTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPT 710
Query: 157 TS*ITSSINLTLYV-SENISSPVITS 83
++ +S N T + + ++S+P+ S
Sbjct: 711 STFTSSGFNTTSGLPTSSVSTPLSNS 736
Score = 27.5 bits (58), Expect = 0.54
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = -3
Query: 319 FLSPNAHVSTSL*FSTMSTPVSTLESVPSSASSAEGFNPSMWISSCVLIT------VLPV 158
F S + ++ L S+ STP+S P+S ++ GFN + + + T ++P
Sbjct: 620 FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNSSIVPT 679
Query: 157 TS*ITSSINLTLYV-SENISSPVITS 83
++ +S N T + + + S+P+ S
Sbjct: 680 STFTSSGFNTTSGLPTSSASTPLSNS 705
Score = 24.6 bits (51), Expect = 3.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 313 SPNAHVSTSL*FSTMSTPVSTLESVPSSASSAEGFN 206
S N VS S+ T STP+S P+S ++ GFN
Sbjct: 592 SGNGDVSGSVTTPT-STPLSNSTVAPTSTFTSSGFN 626
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 29.9 bits (64), Expect = 0.10
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +3
Query: 21 SRSFGFIILNRLQSIKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDIHI 200
SR+ + I +L +++YK + M DT++ ++ +YE++G +R + + +
Sbjct: 118 SRNLLYSIAEKLGLSSIVVYKAELITSSMLLDTFQTMESNQEMYELSGTRKMRRRIAMGL 177
Query: 201 DGL 209
GL
Sbjct: 178 AGL 180
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 29.9 bits (64), Expect = 0.10
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2
Query: 188 VLCSDHGLAGDFINNFVDQLNSIRIREHLVTSYNILIDYHFDGLE 54
V+C D GL+G+F +SIR + + Y LI Y FDG E
Sbjct: 288 VMCLDLGLSGEFCTAVA---HSIREQCQMYIKYLSLIGYLFDGSE 329
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.13
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = -3
Query: 307 NAHVSTSL*FSTM---STPVSTLESVPSSA---SSAEGFNPSMWISSCVLITVLPVTS*I 146
N STS+ +++ STP++T S++ +S + + ISS +T PVT+
Sbjct: 531 NCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Query: 145 TSSINLTLYVSENISSPVITS 83
++ LY S I+SP TS
Sbjct: 591 CTTSTSVLYTSTPITSPNSTS 611
Score = 25.8 bits (54), Expect = 1.7
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = -3
Query: 307 NAHVSTSL*FSTM---STPVSTLESVPSSA---SSAEGFNPSMWISSCVLITVLPVTS*I 146
N STS+ +++ STP++T S++ +S + + ISS +T PVT+
Sbjct: 472 NCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
Query: 145 TSSINLTLYVSENI-SSPVITS 83
++ LY S + S+P+ T+
Sbjct: 532 CTTSTSVLYTSTPVTSTPLATT 553
Score = 25.4 bits (53), Expect = 2.2
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 277 STMSTPVSTLESVPSSASSAEGFNPSMWISSCVLITVLPVTS-*ITSSINLTLYVSENIS 101
S++STP++ S++S++ P+ S+ + LP TS T+S ++ S ++S
Sbjct: 185 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLS 244
Query: 100 SPV 92
+P+
Sbjct: 245 TPI 247
Score = 25.4 bits (53), Expect = 2.2
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -3
Query: 268 STPVSTLESVPSSASSAEGFNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 89
+TPV+ +VP ++SS + S+ V T PVTS ++ N T S +S +
Sbjct: 406 TTPVTP--TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPV 463
Query: 88 TS 83
TS
Sbjct: 464 TS 465
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 0.41
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 218 RGVQSINVDIVLCSDHGLAGDFINNFVDQLNSIRIREHLVTSYNILI 78
R +QS+ D L +D +G + N QLNS+ E +T Y+ L+
Sbjct: 82 RSLQSLMAD--LNTDIQASGRDLQNMKQQLNSLSTSERFLTKYHNLV 126
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 0.72
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -3
Query: 298 VSTSL*FSTMSTPVSTLESVPSSASSAEGFNPSMWISSCVLITVLPVTS*ITSSINLTLY 119
+S+SL ++ STP T PS+ S PS S+ +++ V S +TS I+ T
Sbjct: 566 ISSSLTATSTSTPALTHSITPSNTSYTSSLIPSS--STDYSSSLITVCSNVTSEISSTSL 623
Query: 118 VS 113
S
Sbjct: 624 AS 625
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.1 bits (57), Expect = 0.72
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = -3
Query: 298 VSTSL*FSTMSTPVSTLESVPSSASS 221
V+T++ +S+ STPVST+ +P++ S
Sbjct: 981 VATTITYSSSSTPVSTVVVIPTAVCS 1006
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 0.95
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 126 VKLIDEVIYEVTGKTVIRTQDDIHIDGLNPSAEEADEGTDSSVETGVDIV 275
+KLID I + G D HI +N A EA ++ +GV +V
Sbjct: 455 LKLIDFGIAKAIGNDTTNIHRDSHIGTINYMAPEALTDMNAHTNSGVKLV 504
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.2 bits (55), Expect = 1.3
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +3
Query: 138 DEVIYEVTGKTVIRTQDDIHIDGLNPSAEE-----ADEGTDSSVET-GVDIVLNHRLVE 296
DE+ + + +D + + EE A E ++ +T +D+VL+HRL+E
Sbjct: 145 DEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDVVLDHRLIE 203
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 1.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 138 DEVIYEVTGKTVIRTQDDIHIDGLNPSAEEADEGTDSSVETGVDIV 275
DEV + +G I + +D + EE+DE D S T D+V
Sbjct: 103 DEVFFSASGDATIHLSGNFLVDEEDEEEEESDEDYDLS-PTEEDLV 147
>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 140
Score = 25.8 bits (54), Expect = 1.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 42 ILNRLQSIKMIIYKDVITGDEMFSDTYRVKLID 140
ILN++ M IY IT D SDTY + D
Sbjct: 30 ILNKIFHPCMYIYSRGITNDTYSSDTYELDWYD 62
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 1.7
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 191 IVLCSDHGLAGDFINNFVDQLNSIRIREHLVT--SYNILIDYHFDG 60
+++ S+ L D + ++L SIR ++ + +Y I+ DY FDG
Sbjct: 884 LIINSNGKLPHDVRHQATEKLESIRKQDVAIAHNAYYIITDYDFDG 929
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 277 STMSTPVSTLESVPSSASSAEG 212
S +P+S+LES+PS +S+ G
Sbjct: 147 SNHPSPISSLESLPSRSSTGSG 168
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 2.9
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 75 IYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDIHI-DGLNPSAEEADEGTDSS 251
I K G E ++ ++++ +DE + +T++ DD+ + D L P+ + + D
Sbjct: 21 ILKKHPAGTENITNIWQMRAMDEECRKQLAETILPLPDDVSVTDILIPTRDGTE--IDGR 78
Query: 252 VETGVDIVLNHR 287
V T V + ++R
Sbjct: 79 VFTPVSVPADYR 90
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 201 DGLNPSAEEADEGTDSSVETGVD 269
DG++ SA + D TDS VE+ V+
Sbjct: 98 DGVHVSAVQLDNETDSEVESEVE 120
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 303 HTFRLACDSALCLHQSPRWNPSLRQPPRP 217
H R + D+ H+ P PSL PP P
Sbjct: 46 HDRRTSTDTTHSRHRYPETPPSLPPPPSP 74
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 5.1
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = -3
Query: 319 FLSPNAHVSTSL*FSTMSTPVSTLESVPSSASSAEGFNPSMWISSCVLITVLPVTS*ITS 140
F+SP++ S+S S+ +T ST S + AS++ G + + CV V+PVT+ T+
Sbjct: 165 FVSPSSSSSSS---SSAATSTSTRVSSSAKASTSSG--AIAYTTKCV---VVPVTASATA 216
Query: 139 S 137
+
Sbjct: 217 T 217
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 5.1
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = -3
Query: 319 FLSPNAHVSTSL*FSTMSTPVSTLESVPSSASSAEGFNPSMWISSCVLITVLPVTS*ITS 140
F+SP++ S+S S+ +T ST S + AS++ G + + CV V+PVT+ T+
Sbjct: 165 FVSPSSSSSSS---SSAATSTSTRVSSSAKASTSSG--AIAYTTKCV---VVPVTASATA 216
Query: 139 S 137
+
Sbjct: 217 T 217
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 24.2 bits (50), Expect = 5.1
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 99 DEMFSDTYR---VKLIDEVIYEVTGKTVIRTQDDIHIDGLNPSAEEADEGTDSSVETGVD 269
D++ S +R V+L++ + V+++QD ++GLN +A D V+ +
Sbjct: 53 DDLISFVWRKVKVRLMNISYSPASVTAVVKSQDFSRLNGLNGAAFAGDHLAIRRVDGASN 112
Query: 270 IVLNHRLVET 299
+ ++R +T
Sbjct: 113 VTQDYRKAKT 122
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 224 LGRGVQSINVDIVLCSDHGLAGDFI 150
LG+ VQSI+V L H + G F+
Sbjct: 871 LGKTVQSISVMAYLAETHNIWGPFL 895
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 149 NNFVDQLNSIRIREHLVTSYNILID 75
N+F++QLN R +++L + I +D
Sbjct: 237 NSFINQLNRRRTKDNLTNNPEISLD 261
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 23.8 bits (49), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 179 SDHGLAGDFINNFVDQLNSIRIREHLVTSYNILID 75
S++GL DF N +D LN + L+ +IL+D
Sbjct: 415 SNYGLVDDFFGNELDGLNDSPL---LLNKKDILLD 446
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 23.8 bits (49), Expect = 6.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = -3
Query: 133 NLTLYVSENISSPVITS-------L*IIILMDWRRFKIIKPKLRLLAPSL 5
NL + NI +P TS L II ++ + +IKP + +LAP++
Sbjct: 2523 NLVEALKVNIEAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAI 2572
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 12 GARSRSFGFIILNRLQS 62
G + SF F++LNRLQ+
Sbjct: 17 GVATFSFAFLVLNRLQA 33
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 135 IDEVIYEVTGKTVIRTQDDIHIDG 206
ID V +EV ++ I+ +DD ++G
Sbjct: 386 IDAVPFEVPQRSAIKARDDEQVEG 409
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 23.8 bits (49), Expect = 6.7
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +3
Query: 66 KMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVI--RTQDDIH-IDGLNPSAEEADE 236
KM+ Y D+ TGD + + I ++Y +G DD+ + G S+ D
Sbjct: 254 KMVYYWDLNTGDAISTYNCESGQISNIVYRPSGAVNPWGSESDDMRSLFGTPASSSSYDA 313
Query: 237 GTDSSVETGVD 269
D VE ++
Sbjct: 314 LFDEEVEKAIE 324
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 245 IRPFVSLLGRGVQSINVD 192
IRPFV + GRG SI ++
Sbjct: 342 IRPFVIVTGRGNHSIGLE 359
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 23.4 bits (48), Expect = 8.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 207 LNPSAEEADEGTDSSVETGVDIVLNHRLVETCAFGDK 317
+NPSA + G +S +TG L R+V+ A K
Sbjct: 76 MNPSAASSTTGENSISQTGSGPFLRIRIVDIEAENSK 112
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 23.4 bits (48), Expect = 8.8
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Frame = +3
Query: 141 EVIYE--VTGKTVIRTQDDIHIDGLN---PSAEEA-DEGTDS---SVETGVDIVL 278
E+I E VTG +I Q+ +H+D P+AE + +GT SV+T +V+
Sbjct: 501 EIIPEPNVTGNALIELQESLHLDSYGFFFPNAERSLPKGTRGRIVSVDTYPPVVM 555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,065
Number of Sequences: 5004
Number of extensions: 28095
Number of successful extensions: 126
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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