Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M14
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 64 2e-11
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 29 0.86
10_01_0108 + 1337009-1338190 29 1.1
04_03_0964 - 21290107-21290667,21290780-21291130,21291230-212914... 29 1.1
12_02_0630 + 21367620-21367695,21367890-21367976,21368287-213683... 28 1.5
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420... 28 1.5
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317... 28 1.5
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 28 1.5
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 27 4.6
08_01_0291 - 2337777-2338343 27 4.6
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 27 4.6
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 27 4.6
12_01_0656 - 5554906-5555194,5555640-5556178 26 6.1
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 26 6.1
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589... 26 6.1
12_01_0087 + 692180-693361,695920-696150 26 8.0
11_01_0086 + 646609-647791,648838-649115,650502-650735 26 8.0
05_01_0015 + 117238-117996 26 8.0
03_02_0590 - 9678775-9678826,9678905-9678993,9679093-9679200,967... 26 8.0
01_06_0121 + 26646288-26647025,26648466-26648494,26649387-266494... 26 8.0
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 64.5 bits (150), Expect = 2e-11
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Frame = +3
Query: 69 MIIYKDVITGDEMFSDTYRVKLIDE-VIYEVTGKTVIRTQDDIHIDGLNPSAEEA--DEG 239
M++Y+D++TGDE+ SD++ + I+ +++EV GK V++ D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 240 TDSSVETGVDIVLNHRLVETCAFGDKKSY 326
D VDIV RL E F DKK +
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQF 87
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 29.1 bits (62), Expect = 0.86
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 220 AEGFNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 89
+EG N S + CV++ LP S + T+ ENIS PV+
Sbjct: 662 SEGINFSDGMGRCVVMVGLPYPSPSDVELTETIKYIENISKPVL 705
>10_01_0108 + 1337009-1338190
Length = 393
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 63 IKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDIHIDGL 209
I + + + E ++D Y+ +L+D I E+ K V++ +I + L
Sbjct: 131 IGLTFIRSIHLSSEAYNDAYKFRLLDSCIDEIGEKNVVQVVSNIEPNSL 179
>04_03_0964 -
21290107-21290667,21290780-21291130,21291230-21291411,
21291505-21291631,21291956-21292168,21292627-21292755,
21292891-21293616
Length = 762
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 135 IDEVIYEVTGKTVIRTQDDIHIDGLNP 215
+ E ++EVTGK + DD + DG +P
Sbjct: 639 LSETVFEVTGKDKSMSDDDDNTDGADP 665
>12_02_0630 +
21367620-21367695,21367890-21367976,21368287-21368333,
21368413-21368470,21369056-21369166,21369353-21369478,
21370123-21370182,21370966-21371186,21371274-21371460,
21371939-21372063
Length = 365
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 63 IKMIIYKDVITGDEMFSDTYRVKLIDEVIYEVTGKTVIRTQDDIHIDGLNPSAEEAD 233
+K+++ + T D++ D +++ +++ ++ +DD+HI G P A+ D
Sbjct: 14 LKLVMMESHATPDDLTGDKGAAQILHRQLFDAHEPNLL-DEDDMHIFGSKPMADPLD 69
>11_06_0025 -
19341127-19341339,19341426-19341620,19341912-19342088,
19342505-19342672,19343533-19343574,19344129-19344214,
19345218-19345545
Length = 402
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 60 SIKMIIYKDVITGDEMFSDTYRVKLIDE 143
+ K+I + + DEMFSD R KL+D+
Sbjct: 318 AFKIICSRKIDKSDEMFSDDVRSKLLDD 345
>11_06_0024 -
19331250-19331380,19331412-19331484,19331571-19331768,
19333317-19333484,19334187-19334263,19335321-19335423
Length = 249
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 60 SIKMIIYKDVITGDEMFSDTYRVKLIDE 143
+ K+I + + DEMFSD R KL+D+
Sbjct: 168 AFKIICSRKIDKSDEMFSDDVRSKLLDD 195
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 266 YTSLHAGIRPFVSLLGRGVQSINVDIVLCSD 174
Y + H + P+VSL+ GVQ++ L +D
Sbjct: 741 YIASHPDVAPYVSLVALGVQAVGYTATLVTD 771
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 192 IHIDGLNPSAEEADEGTDSSVETGVDIVLNHRLVETCAFGDKK 320
+ I+ N S EE +E +++ VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>08_01_0291 - 2337777-2338343
Length = 188
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 182 CSDHGLAGDFINNFVDQLN 126
CS GLAGD++N +D N
Sbjct: 134 CSFDGLAGDYLNGLIDVEN 152
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 145 LFMKSPARP*SEHKTISTLMD*TPRPRRLTKGRIPAWRL 261
L + +PA P + H+ L+ +PR L R P WRL
Sbjct: 6 LLLANPAAPTARHQ--HRLLQQRRQPRLLASSRPPRWRL 42
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 291 LACDSALCLHQSPRWNPSLRQPPRPRGSI 205
L C + L ++P+W P L+ PP R ++
Sbjct: 81 LDCPTRCALPRAPKWPPLLQIPPPERRAV 109
>12_01_0656 - 5554906-5555194,5555640-5556178
Length = 275
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 274 TMSTPVSTLESVPSSASSAEGFNPSMWISSCVLITVLP 161
T T LE+VP+S +S F+P M I+ T++P
Sbjct: 142 TFLTKTVVLETVPASIASLSAFSPRM-IADIKQYTLMP 178
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 183 QDDIHIDGLNPSAEEADEGTDS-SVETGVDIVL 278
+D + +DG+ PSA + EG + VE D VL
Sbjct: 83 EDSMEVDGVGPSASASAEGVGAEEVEDEEDYVL 115
>06_03_1227 +
28557855-28558323,28558426-28558586,28558850-28558929,
28559015-28559150,28559239-28559388,28559717-28559899
Length = 392
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 294 RLACDSALCLHQSPRWNPSLRQ 229
RLA ++LC+ S +W PS+ +
Sbjct: 311 RLAFVASLCIRSSAKWRPSMTE 332
>12_01_0087 + 692180-693361,695920-696150
Length = 470
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -2
Query: 185 LCSDHGLAGDFINNFVDQLNSIRIREHLVTSYNILIDYHFDGLEAI*NNKTETTASSPKP 6
LCS +G G IN+ + + S +L+ DGL++ N++ SS KP
Sbjct: 108 LCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELDGLKSA-NSRLNKQISSSKP 166
>11_01_0086 + 646609-647791,648838-649115,650502-650735
Length = 564
Score = 25.8 bits (54), Expect = 8.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -2
Query: 185 LCSDHGLAGDFINNFVDQLNSIRIREHLVTSYNILIDYHFDGLEAI*NNKTETTASSPKP 6
LCS +G G IN+ + + S +L+ DGL++ N++ SS KP
Sbjct: 108 LCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELDGLKSA-NSRLNKQISSSKP 166
>05_01_0015 + 117238-117996
Length = 252
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 216 SAEEADEGTDSSVETGVDIVLNHRLVETCAF 308
+A ADEG S +E G +V RLVE ++
Sbjct: 14 TAASADEGQRSVLEFGAIVVCPRRLVEVDSY 44
>03_02_0590 -
9678775-9678826,9678905-9678993,9679093-9679200,
9679652-9679750,9679827-9679957,9680014-9680080
Length = 181
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 141 EVIYEVTGKTVIRTQDDIHIDGL 209
EVI K +RT DDIHID L
Sbjct: 152 EVIALTKKKLGVRTYDDIHIDQL 174
>01_06_0121 +
26646288-26647025,26648466-26648494,26649387-26649434,
26650398-26650558,26650945-26651268,26651703-26651854
Length = 483
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 198 IDGLNPSAEEADEGTDSSVETGVDIVLNHRLVETCAFGDKKS 323
+DG AEEAD G + T V V+ R + GD ++
Sbjct: 189 VDGEVGGAEEADTGEQTVGSTAVVAVVGPRRIVVANCGDSRA 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,188,288
Number of Sequences: 37544
Number of extensions: 180929
Number of successful extensions: 567
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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