Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M12
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   1.8  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    23   4.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    23   4.1  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   4.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    23   5.5  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    23   5.5  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    23   5.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.2  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    22   9.6  

>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 196 VRMKRTTLVTE-ARTELLIALSILFECMILLPRDK*CNTPFLIFIIY 59
           +R  R  L  E    E + AL++LFE +  L R     TPF+   IY
Sbjct: 731 IRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFITENIY 777


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 56  TVNNKYQERSVALFVSGKEYHTFEQNA*CNQKLC 157
           T + +Y ER ++L  S  E+  ++ N    ++LC
Sbjct: 16  TESTEYNERLISLGESFLEWSKYKHNLKATEELC 49


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 140 CNQKLCTSLSDECSTFHSNDCSA 208
           CN+K C   S+ C    S+ C A
Sbjct: 241 CNKKSCGDHSEACCPLSSSLCDA 263


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 65  NKYQERSVALFVSGKEYHT 121
           NK+Q  S+   VSG  YHT
Sbjct: 182 NKHQGHSLLQTVSGLNYHT 200


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 35  VNCFKVITVNNKYQERSVALFVSGKEYHTF 124
           V+ F  ITVN K  ++ + L + G E H F
Sbjct: 741 VDDFLFITVNKKDAKKFLNLSLRGFEKHNF 770


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 44  FKVITVNNKYQERSVALFVSGKEY 115
           FK+     K+Q RS+A F+ G  Y
Sbjct: 193 FKLAMSPLKFQTRSLACFIKGDGY 216


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 181 TTLVTEARTELLIALSILFECMI 113
           TT+  + R E+L   S+LF C++
Sbjct: 317 TTVRLKHRLEILSLFSVLFTCIV 339


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 175 LVTEARTELLIALSILFECMILLPRDK*CNTPF 77
           L+   +   L++  +LF   +L+P D   N  F
Sbjct: 97  LLNRRKVSFLLSFLLLFSLFLLIPNDGRVNIKF 129


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 76  LIFIIYGYNLKTVNLFISAVDI 11
           ++F  YG  + T NLF+ A D+
Sbjct: 100 IMFTAYGLGVHTHNLFMLACDM 121


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 68  KYQERSVALFVSGKEYHTFEQN-A*CNQKLCTSLSDECSTFHSNDCSAI 211
           K Q++S++   SG E   F+   +  N+++ TSL ++ S FH +  + I
Sbjct: 26  KSQKKSISPS-SGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPI 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,495
Number of Sequences: 5004
Number of extensions: 13310
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)