Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M12
         (217 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73911-3|CAC42339.1|  324|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical...    25   7.3  
Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z73911-3|CAC42339.1|  324|Caenorhabditis elegans Hypothetical
           protein T12A7.7 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -3

Query: 191 NETYYTRH*-----GSYRASDCIKHFVRMYDTPSQRQIMQHSFPDIYY 63
           NE+YY+ +       SY    C  HF+     P  R ++ H F +IY+
Sbjct: 9   NESYYSSYKVQAELNSYYKLSC--HFIPFLTLPIYRSLLLHLFGEIYW 54


>AC087081-17|AAG37969.1|  235|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.2 protein.
          Length = 235

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 126 SNV*YSFPETNNATLLS*YLLFTVITLKQLTY 31
           S + Y+FP+T   T L    +FT  T+ ++ Y
Sbjct: 114 SPIKYTFPKTTKLTNLQKVSIFTFFTIMEVYY 145


>Z83220-1|CAB05700.2|  440|Caenorhabditis elegans Hypothetical
           protein C34B7.1 protein.
          Length = 440

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 131 NA*CNQKLCTSLSDECSTFHSNDCS 205
           N+ C Q        ECS  +S+DCS
Sbjct: 309 NSQCTQDTSAVTCTECSAVNSDDCS 333


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
 Frame = -2

Query: 183 VLHSSLRLVQSF*LH*AFCSNV*YS-FPE---TNNATLLS*YLLFTVITLKQLTYSSLQL 16
           +L  ++ +++ F +   F  +  YS +PE   T+ +T++  +L+FT+I  K +TY  + +
Sbjct: 79  LLFRNILMIELFGIVMYFLLSFKYSQYPEFIGTSISTIIHVFLIFTLIFPKMMTYFMISI 138


>Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical
           protein ZC410.7c protein.
          Length = 307

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 184 RTTLVTEARTELLIALSILFECMILLPRD 98
           R   V++AR  LL A +  FEC++  P D
Sbjct: 264 RNVTVSDARPILLNAFANNFECLLNEPND 292


>Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical
           protein ZC410.7b protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 184 RTTLVTEARTELLIALSILFECMILLPRD 98
           R   V++AR  LL A +  FEC++  P D
Sbjct: 266 RNVTVSDARPILLNAFANNFECLLNEPND 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,638,060
Number of Sequences: 27780
Number of extensions: 75381
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)