Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M11
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   1.3  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    23   4.0  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    23   4.0  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    23   5.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    23   5.3  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    23   5.3  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    23   7.1  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    22   9.3  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    22   9.3  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 173 QYLRGARSIAKLVGIRAKRLKDAAEN 96
           ++LR A S A++VG   +R++   EN
Sbjct: 848 EFLRNAASQAEIVGANKERIQKTVEN 873


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 12  G*QSFIYNN-HFFGLVSFTAVGAFSDIIRIFC 104
           G + F+Y+N H F   +   VG  + I+ +FC
Sbjct: 242 GYRDFVYHNKHIFAGKTVLDVGCGTGILSMFC 273


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 21  SFIYNNHFFGLVSFTAVGAFSDIIRIFCRILQSLG 125
           S+I  +  F + S + V   + ++ + C ILQ +G
Sbjct: 86  SYILPSKLFTIFSRSLVNRSAAVVHVICWILQFIG 120


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 104 PHPSVAWLGCPQVWQ 148
           PHP V W  C  V Q
Sbjct: 424 PHPRVRWAACNAVGQ 438


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 145  PNLWASEPSD*RMRQKILMMSLKAPTAVKE 56
            P +W  EP D R  Q   ++SL    + K+
Sbjct: 1070 PGVWTLEPMDGRSSQFYEILSLNKKNSYKD 1099


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 27  IYNNHFFGLVSFTAVGAFSDIIRIFCRILQSLGSDAHK 140
           I+  H     SF  V    ++  + CR+L+     +HK
Sbjct: 34  IFPKHLCAFESFLYVAVGQEVRSLDCRLLKHKNEASHK 71


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 95  DFLPHPSVAWLGCPQVW 145
           + +P    A+L CP+VW
Sbjct: 489 EIVPAKERAYLSCPKVW 505


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 154 VLLPNLWASEP 122
           +L PNLWA  P
Sbjct: 223 ILTPNLWAERP 233


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 99  FCRILQSLGSDAHKFGNRTSSSKV 170
           FC+ LQ +  DA+ F  +  + K+
Sbjct: 108 FCKRLQQIDYDAYSFSPKECNEKL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,330
Number of Sequences: 5004
Number of extensions: 9031
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)