Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M11
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0258 - 2711113-2711177,2712134-2713271                           26   3.7  
04_04_0206 + 23595268-23595279,23595475-23596317,23597037-235970...    25   6.5  
03_02_0178 + 6195402-6199158,6199438-6200003                           25   8.6  
01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022     25   8.6  

>10_01_0258 - 2711113-2711177,2712134-2713271
          Length = 400

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 24  FIYNNHFFGLVSFTAVGAFSDII 92
           F+  +H FG +  +A+GA+ D+I
Sbjct: 181 FVSGDHVFGCMFSSAIGAWGDVI 203


>04_04_0206 +
           23595268-23595279,23595475-23596317,23597037-23597088,
           23597328-23597395,23597482-23597585,23597681-23597768,
           23598405-23598722
          Length = 494

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 167 LRGARSIAKLVGIRAKRLKDAAENPDDVTKGTYS 66
           L+   S  ++ G+ A  L+ AAE  +DV K  YS
Sbjct: 60  LQRTNSDVRVPGVTAAALRAAAEAAEDVLKEKYS 93


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 153  FYCQTCGHPSQ 121
            F+C  CGHPS+
Sbjct: 1170 FHCAACGHPSE 1180


>01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022
          Length = 342

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 150 YCQTCGHPSQATEGCGRKS 94
           YC+ CG        CGRKS
Sbjct: 304 YCKQCGGHGHYNSTCGRKS 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,309,354
Number of Sequences: 37544
Number of extensions: 56488
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)