Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M11
(179 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64707-1|CAA45963.1| 211|Homo sapiens BBC1 protein. 34 0.071
BC106058-1|AAI06059.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC093063-1|AAH93063.1| 211|Homo sapiens RPL13 protein protein. 34 0.071
BC066320-1|AAH66320.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC063378-1|AAH63378.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC027463-1|AAH27463.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC020804-1|AAH20804.1| 211|Homo sapiens RPL13 protein protein. 34 0.071
BC014167-1|AAH14167.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC013078-1|AAH13078.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC010994-1|AAH10994.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC007805-1|AAH07805.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC007563-1|AAH07563.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC007345-1|AAH07345.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
BC004954-1|AAH04954.1| 211|Homo sapiens RPL13 protein protein. 34 0.071
AB062392-1|BAB93479.1| 211|Homo sapiens ribosomal protein L13 p... 34 0.071
AB007172-1|BAA25832.1| 65|Homo sapiens ribosomal protein L13 p... 34 0.094
>X64707-1|CAA45963.1| 211|Homo sapiens BBC1 protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC106058-1|AAI06059.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC093063-1|AAH93063.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC066320-1|AAH66320.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC063378-1|AAH63378.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC027463-1|AAH27463.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC020804-1|AAH20804.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC014167-1|AAH14167.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC013078-1|AAH13078.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC010994-1|AAH10994.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC007805-1|AAH07805.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC007563-1|AAH07563.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC007345-1|AAH07345.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>BC004954-1|AAH04954.1| 211|Homo sapiens RPL13 protein protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>AB062392-1|BAB93479.1| 211|Homo sapiens ribosomal protein L13
protein.
Length = 211
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 78
A+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 178 AFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>AB007172-1|BAA25832.1| 65|Homo sapiens ribosomal protein L13
protein.
Length = 65
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -1
Query: 179 AYQYLRGARSIAKLVGIRAKRLKDAAE 99
A+ LR AR+ A+L GIRAKR K+AAE
Sbjct: 35 AFASLRMARANARLFGIRAKRAKEAAE 61
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,481,451
Number of Sequences: 237096
Number of extensions: 311557
Number of successful extensions: 682
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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