Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M11
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    28   0.76 
Z68749-2|CAA92961.1|  260|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AC024204-3|AAF36041.1|  330|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81069-2|CAB02992.1|  310|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
            protein Y18D10A.1 protein.
          Length = 1634

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 161  GARSIAKLVGI--RAKRLKDAAENPDDVTKGTY 69
            G+    +L+ +   A R  ++AENPDDVT   Y
Sbjct: 1331 GSNECGRLIRLFCHAVRFSESAENPDDVTSPVY 1363


>Z68749-2|CAA92961.1|  260|Caenorhabditis elegans Hypothetical
           protein F56H11.6 protein.
          Length = 260

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 149 IAKLVGIRAKRLKDAAENPDDVTKGTYS 66
           + +L+G   K LK  + NPD +T GT+S
Sbjct: 29  VLELLGDNLKVLKAKSPNPDLLTDGTWS 56


>AC024204-3|AAF36041.1|  330|Caenorhabditis elegans Hypothetical
           protein Y73B6A.2 protein.
          Length = 330

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 149 IAKLVGIRAKRLKDAAENPDDVTKGTYS 66
           +  L+G   K L+  + NPD +T GT+S
Sbjct: 97  VMNLLGRSLKDLRLMSPNPDSLTPGTWS 124


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 119 RLKDAAENPDDVTKGTYSCEGN*TEKVI 36
           R +D  E  + VTK TYS E N  + V+
Sbjct: 406 RTRDNCEQGETVTKWTYSTEHNMCKSVL 433


>Z81069-2|CAB02992.1|  310|Caenorhabditis elegans Hypothetical
           protein F25H9.2 protein.
          Length = 310

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 170 YLRGARSIAKLVGIRAKRLKDAAENPDDVTKGTYSCEGN*TEKVIIINKTLL 15
           Y++   +I K +GIR KR+ D     D++T      +G    K I  NK +L
Sbjct: 115 YMQFIVTIVKKIGIREKRIHDFTVPRDNLTNLILIVDG----KNIYCNKHIL 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,727,563
Number of Sequences: 27780
Number of extensions: 51302
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)