Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M10
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   1.4  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        23   4.1  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    23   4.1  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    23   7.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    22   9.5  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 124 EKKKTKIVETRVKPDEQYDRND 59
           EK K    +TR++PD++Y  N+
Sbjct: 847 EKDKLPPTDTRLRPDQRYRENN 868


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 127 KEKKKTKIVETRVKPDEQYDRNDIIQFLFFLNVSK*MN 14
           K + K KI++        Y+ N    F+FFL++ +  N
Sbjct: 137 KWESKLKIIKFNKLAKYVYEGNQFFLFIFFLSICQIRN 174


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  CSSGLTRVSTILVFFFSFNYKRSDVL 152
           C S + +V     F+FS++Y  S  +
Sbjct: 141 CMSSIEKVDLARTFYFSYSYDLSQTI 166


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 96  VSTILVFFFSFNYKR 140
           +STIL+  FSF  KR
Sbjct: 5   ISTILIVIFSFTEKR 19


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 121 KKKTKIVETRVKPDEQYD 68
           +KK   +E+R+KPD+ ++
Sbjct: 312 EKKISGLESRIKPDQSFN 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,486
Number of Sequences: 5004
Number of extensions: 4693
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)