Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M10
         (152 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0369 + 19975703-19975931,19976197-19976239,19976799-199768...    25   6.3  
02_02_0240 + 8196140-8198248,8198381-8198650                           25   8.3  

>06_03_0369 +
           19975703-19975931,19976197-19976239,19976799-19976826,
           19976977-19977114
          Length = 145

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 59  HNSVPILFKC**MNEYL 9
           HNSVP LF C   N+YL
Sbjct: 116 HNSVPSLFFCIVKNQYL 132


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 127 KEKKKTKIVETRVKPDEQYDRN 62
           KE+   KI ET + PD++  RN
Sbjct: 448 KERMLAKIKETTLAPDDEISRN 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,283
Number of Sequences: 37544
Number of extensions: 20228
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)