Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M10
         (152 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid precur...    26   3.2  
U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid precurs...    26   3.2  
U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid pr...    26   3.2  
M77697-9|AAA27904.1|  407|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    25   9.6  

>U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform a protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 127 KEKKKTKIVETRVKPDEQYDRND 59
           +EKK  K+VET V+ D++ D  D
Sbjct: 544 EEKKAPKLVETSVQTDDEDDDED 566


>U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform b protein.
          Length = 684

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 127 KEKKKTKIVETRVKPDEQYDRND 59
           +EKK  K+VET V+ D++ D  D
Sbjct: 542 EEKKAPKLVETSVQTDDEDDDED 564


>U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid
           protein precursor protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 127 KEKKKTKIVETRVKPDEQYDRND 59
           +EKK  K+VET V+ D++ D  D
Sbjct: 538 EEKKAPKLVETSVQTDDEDDDED 560


>M77697-9|AAA27904.1|  407|Caenorhabditis elegans Hypothetical
           protein B0303.14 protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 124 EKKKTKIVETRVKPDEQYDRNDIIQFLFFLNV 29
           ++K+TK VE  V  +E  +  DII  +  LNV
Sbjct: 123 QRKQTKRVENVVASEELLELEDIIDQISDLNV 154


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 130 LKEKKKTKIVETRVKPDEQYDRND 59
           L +KK+ + VE  V+ D+  DRN+
Sbjct: 401 LVQKKRRRKVEEEVEEDQMEDRNE 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,309
Number of Sequences: 27780
Number of extensions: 25336
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)