Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M10
         (152 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   2.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   5.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    18   9.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 70  DRNDIIQFLFFLN 32
           D ND++  L+F+N
Sbjct: 74  DINDVLNVLYFIN 86


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein
          protein.
          Length = 471

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 7  GRYSFIY*HL 36
          GRY F Y HL
Sbjct: 44 GRYMFTYLHL 53


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 109  KIVETRVKPDEQYDRNDII 53
            KIV +R K  ++ + N+II
Sbjct: 1535 KIVVSRNKAYQKVEENEII 1553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,856
Number of Sequences: 438
Number of extensions: 436
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)