Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M09
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     23   4.1  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    23   4.1  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    23   5.4  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    22   9.5  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    22   9.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    22   9.5  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    22   9.5  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    22   9.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    22   9.5  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    22   9.5  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 25  RHEWLTDTSV**TMYVSMIGKNIKLIFNL*IE 120
           R++WL   S+    Y+S IG  I  +F+L IE
Sbjct: 442 RYDWLLLRSIVFFGYLSWIGYVICFVFSLNIE 473


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 152 CQNI*LNYTVSSIHKLNINLIFLPIIDTYIV 60
           CQN    Y+V ++H+L+  L+   +   +I+
Sbjct: 82  CQNDGKCYSVIAVHRLSFTLVMFHLFLAFIL 112


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 51  CMINYVRIYDRQ 86
           C+I YV  YDRQ
Sbjct: 130 CLIGYVESYDRQ 141


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 107 LNINLIFLPIIDTYIVYHTLVSVSHSCRKI 18
           L ++   L  I TY+ Y  +V +S +C+ +
Sbjct: 7   LELSYDILLEISTYLDYKDIVHLSETCKSL 36


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 3   PPWLQDFSARVANRHQCMINYV 68
           P WL      ++N H C++ Y+
Sbjct: 58  PKWLNRDRFILSNGHACVLQYI 79


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 6   PWLQDFSARVANRHQCMIN 62
           PWL++FS++  ++   ++N
Sbjct: 55  PWLEEFSSQDTSKDPTLLN 73


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 134 NYTVSSIHKLNINLIFLPI 78
           ++TVSSI  L I L+FL I
Sbjct: 284 HHTVSSIQWLGILLVFLGI 302


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 128 TVSSIHKLNINLIFLPIIDTYIVY 57
           T+ S H L   + FLP+   Y+ +
Sbjct: 132 TIQSSHSLADEIYFLPVTAEYLTH 155


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 7   RGCRIFRHEW 36
           RGCR+FR  W
Sbjct: 251 RGCRLFRSIW 260


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 101 INLIFLPIIDTYIVYH 54
           +N +F PI+  Y+V H
Sbjct: 421 LNCLFAPIVAIYLVIH 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,468
Number of Sequences: 5004
Number of extensions: 9584
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)