Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M09
         (163 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family pr...    28   0.78 
Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U41278-7|AAT81193.1|  680|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U41278-6|AAK31510.3|  771|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U23484-4|AAC46768.2|  260|Caenorhabditis elegans Nudix family
           protein 6 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 161 HQSCQNI*LNYTVSSIHKLNI 99
           HQ C+NI   Y  S+IH+LN+
Sbjct: 5   HQKCRNIDTVYLGSNIHRLNV 25


>Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical
           protein F55C5.6 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 1   IPRGCRIFRHEWLTD 45
           IP+  +I+RH W+TD
Sbjct: 350 IPKIQKIYRHNWITD 364


>U41278-7|AAT81193.1|  680|Caenorhabditis elegans Hypothetical
           protein F33G12.6b protein.
          Length = 680

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 119 SIHKLNINLIFLPIIDTYIVYHTLVSVSHSCRKILQPRG 3
           +I  LN  +I   + DT  V+H +++  HS   ++   G
Sbjct: 247 AIDHLNTRVIKDSLADTTEVFHEMLAAFHSAHSLILQEG 285


>U41278-6|AAK31510.3|  771|Caenorhabditis elegans Hypothetical
           protein F33G12.6a protein.
          Length = 771

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 119 SIHKLNINLIFLPIIDTYIVYHTLVSVSHSCRKILQPRG 3
           +I  LN  +I   + DT  V+H +++  HS   ++   G
Sbjct: 247 AIDHLNTRVIKDSLADTTEVFHEMLAAFHSAHSLILQEG 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,606,800
Number of Sequences: 27780
Number of extensions: 51001
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)