Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M08
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 148 9e-37
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 142 5e-35
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 138 1e-33
01_01_0981 + 7766025-7766753 30 0.38
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 29 0.67
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 29 1.2
03_05_0830 + 28034179-28035492 29 1.2
07_02_0030 + 12002825-12003510,12003654-12003708,12003911-120039... 27 3.6
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 27 3.6
07_03_1085 - 23851852-23853165 27 4.7
07_01_0325 + 2275922-2276013,2276467-2276500,2276810-2276932,227... 27 4.7
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 26 6.2
03_01_0010 - 94931-96034,96117-96442,97154-97283 26 6.2
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500... 26 6.2
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380... 26 8.3
08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080 26 8.3
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 148 bits (359), Expect = 9e-37
Identities = 67/92 (72%), Positives = 79/92 (85%)
Frame = +3
Query: 51 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNFPPLRKSEI 230
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 231 EYYALLAKTGVHHYSGNNIELGTACGKYYRVC 326
EYYA+LAK VHH+ GNN++LGTACGKY+RVC
Sbjct: 61 EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVC 92
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 142 bits (345), Expect = 5e-35
Identities = 63/91 (69%), Positives = 74/91 (81%)
Frame = +3
Query: 54 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNFPPLRKSEIE 233
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 234 YYALLAKTGVHHYSGNNIELGTACGKYYRVC 326
YYA+L K VHH+ GNN++LGTACGKYYRVC
Sbjct: 103 YYAMLGKVSVHHFHGNNVDLGTACGKYYRVC 133
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 138 bits (333), Expect = 1e-33
Identities = 61/85 (71%), Positives = 70/85 (82%)
Frame = +3
Query: 72 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNFPPLRKSEIEYYALLA 251
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 252 KTGVHHYSGNNIELGTACGKYYRVC 326
K V+H++GNN++LGTACGKYYRVC
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVC 210
>01_01_0981 + 7766025-7766753
Length = 242
Score = 30.3 bits (65), Expect = 0.38
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 285 YCFHCSGGHLFWLGEHNILSPTS 217
+C HC H W G H+I+ P +
Sbjct: 40 FCSHCCSSHHLWPGHHHIVVPVT 62
>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 29.5 bits (63), Expect = 0.67
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 104 GSGYEVWQILLGLQTNFEDTQTRES*VGDHRQEFSSSEEVGDRILCSPSQNRCPPLQWK 280
G YE+ I LG + DT+T + GD E SSE ++ PS+ R W+
Sbjct: 993 GKIYEMMTIALGGRWGRSDTETEAATTGDASTETGSSEATVTEVI-EPSEVRPESDPWR 1050
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 36 KTAIIMVAAKKQKKTIESINSRLALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIARNF 206
KT + + K + L LV ++ + CL G K+ +K++R+G+ L IIA N
Sbjct: 11 KTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNI 70
Query: 207 PPL 215
P+
Sbjct: 71 SPI 73
>03_05_0830 + 28034179-28035492
Length = 437
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 120 SGKYCLGYKQTLKTLRQGKAKLVIIARN 203
+GKY G TLKTL G + +I+ N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>07_02_0030 +
12002825-12003510,12003654-12003708,12003911-12003996,
12004093-12004433,12004512-12004699,12004776-12004962,
12005035-12005139,12005202-12005239,12005369-12005653
Length = 656
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 156 KTLRQGKAKLVIIARNFPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKY 314
K RQ K +R P +RKS ++ L TG+ +G++ E G G +
Sbjct: 252 KQPRQANPKKKTSSRPMPKIRKSSRSFWKRLRPTGME--TGSSKETGPTAGNH 302
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 82 MVFFCFFAATIMIAVFYSDPHRHK 11
+V FC A T++ + Y DP +H+
Sbjct: 533 IVLFCTVAQTVLTVLSYVDPRKHE 556
>07_03_1085 - 23851852-23853165
Length = 437
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 120 SGKYCLGYKQTLKTLRQGKAKLVIIARN 203
+GKY G TLK L G + +I+ N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>07_01_0325 +
2275922-2276013,2276467-2276500,2276810-2276932,
2277334-2277401,2277494-2277585,2278662-2278987,
2280771-2281142
Length = 368
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 39 TAIIMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGK 176
+A+++V K K ++S L L++ GYK+ ++QG+
Sbjct: 40 SALVLVLTKSDKPALDSCLDNLGLLLTKFLDLQGYKRLESLVKQGE 85
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 54 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNFP 209
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>03_01_0010 - 94931-96034,96117-96442,97154-97283
Length = 519
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 220 FLRGGKFLAMITNLAFPCLSVFKVCL 143
FL G FLAM+ +L F +F CL
Sbjct: 437 FLIGQTFLAMLCHLKFATFFLFAACL 462
>01_06_1478 -
37648781-37649113,37649200-37649455,37649954-37650066,
37650312-37650689,37650822-37650999,37651429-37651565,
37651993-37652155,37652531-37652688,37652819-37652923,
37653106-37653253,37653816-37654132
Length = 761
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 104 GSGYEVWQILLG-LQTNFEDTQTRES*VGDHRQEFSSSEEVGDRILCSPSQNRCPPLQWK 280
G ++W LG L QT +S GDH F S E+V LC S + P L+W+
Sbjct: 228 GLSLDIWTTYLGELLKVHHGRQTHKS--GDH---FLSDEQV----LCIGSSRKRPVLKWE 278
Query: 281 Q 283
+
Sbjct: 279 E 279
>12_02_0272 -
16634765-16635004,16635412-16635457,16636107-16638098,
16639478-16640286
Length = 1028
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 16 ACEDHCRKLLS*WLQQRNRKRPSSLLIPVWLW 111
AC H S WLQQ R + +P WLW
Sbjct: 755 ACSPHILNFASLWLQQL-IIRKNIRNVPSWLW 785
>08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080
Length = 463
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 261 HLFWLGEHNILSPTSSEEE 205
HL+ +H+IL P SSE+E
Sbjct: 332 HLYIRTDHSILDPVSSEDE 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,692,327
Number of Sequences: 37544
Number of extensions: 190126
Number of successful extensions: 502
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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