Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M08
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   2.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   6.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   6.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   8.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 6/20 (30%), Positives = 8/20 (40%)
 Frame = -1

Query: 255 FWLGEHNILSPTSSEEENSW 196
           +W+     L P    E N W
Sbjct: 347 YWMETRGFLQPVCQNEMNKW 366


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 82  MVFFCFFAATIMIAVFYSDPH 20
           ++ F  F     IAV  S PH
Sbjct: 531 LIIFTLFTIIATIAVLLSAPH 551


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 63  KKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLR 167
           +KQ+  I +   + A   K  K+ + YK+ LK  R
Sbjct: 413 QKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKR 447


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 306 GKYYRVCT 329
           GK++RVCT
Sbjct: 190 GKFHRVCT 197


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 80  GLFLFLCCN 54
           GLFLF C N
Sbjct: 300 GLFLFACTN 308


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 228 SPTSSEEENSWR*SPT 181
           S +SSEE + W+  PT
Sbjct: 377 SISSSEENDFWQPKPT 392


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +2

Query: 239 CSPSQNRCPPLQWKQ 283
           C P+Q     +QW++
Sbjct: 25  CQPTQRTMSKIQWRK 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,257
Number of Sequences: 438
Number of extensions: 1743
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)