Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M06
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   1.2  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   2.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   3.7  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    24   6.4  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    24   6.4  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    24   8.5  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    24   8.5  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   8.5  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.5  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 246  IRSVAGHIARRHPGADVRKVKCDVCEVYVTR 338
            I  + G +  R P +D+RK K  V EV+ +R
Sbjct: 936  INDLFGAVCERFPDSDLRKKKVRVYEVFESR 966


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 6/19 (31%), Positives = 16/19 (84%)
 Frame = +3

Query: 306 KCDVCEVYVTRSRMNRHRV 362
           KCD+ + + T++++++HR+
Sbjct: 71  KCDLADTFHTKAKVSKHRI 89


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 162  EDKPYEVIVTNPGKGNRVMCNL 227
            +D P  ++ T  GK  +++CNL
Sbjct: 1682 DDSPLTLVGTGTGKSGKLVCNL 1703


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 156 RVEDKPYEVIVTNPGKGN 209
           ++ED P  V VTN G+G+
Sbjct: 865 QIEDLPSNVFVTNRGRGS 882


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 299 PNVCAWMSPGYMTGHAPDG*LHQAQIAHHPVSLTRI 192
           P++C W+   Y+         + ++IA +P+S T +
Sbjct: 83  PSICKWILDTYLPLFKKSNNAYPSKIAFNPISNTTL 118


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 219 CNLCLMELSIRSVAGHIARR 278
           CN  ++ +S++S A  +ARR
Sbjct: 240 CNRLMLPMSVQSAAAELARR 259


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 239 LHQAQIAHHPVSLTR 195
           L QA + HHPVS+ R
Sbjct: 142 LVQASVQHHPVSIIR 156


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 137 VLTIPRSSRRQTL 175
           VL +PRSSR+QTL
Sbjct: 197 VLLLPRSSRQQTL 209


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 247 MDNSIRHRLHITRFPLP 197
           MD  + HRL++ R P+P
Sbjct: 355 MDFDLFHRLYLARLPIP 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,494
Number of Sequences: 5004
Number of extensions: 33498
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)