Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M06
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    27   3.4  
01_06_1220 + 35493575-35494765                                         27   3.4  
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32...    27   4.5  
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535...    27   6.0  

>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 282 PGADVRKVKCDVCEVYVTRSRMNRHRVM 365
           P  D+R+ KCD C V  ++  + R  V+
Sbjct: 104 PARDIRRYKCDFCSVVRSKKGLIRAHVL 131


>01_06_1220 + 35493575-35494765
          Length = 396

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 35  RVIPKIVSGSHYGPWASG*VALL 103
           R++PK  SGSH  P AS  VA+L
Sbjct: 59  RIVPKANSGSHISPEASYKVAVL 81


>04_01_0022 +
           324422-324445,324870-325265,325366-325546,325781-326072,
           326389-326461,326610-326700,326815-326894,326992-327234
          Length = 459

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 359 SMPVHPTPRDVHLTHIALDLPNVCAWMSP 273
           ++P+   P   H  H+++D+P   A MSP
Sbjct: 15  TVPLQGDPASDHHPHLSIDIPPAAASMSP 43


>08_02_0266 +
           15051868-15052286,15052376-15052475,15053540-15053581,
           15053734-15053930,15055412-15055508,15055604-15055699,
           15056395-15056633,15056728-15056811,15056898-15057185,
           15057658-15057718,15061093-15061362,15061663-15061722
          Length = 650

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 264 HIARRHPGADVRKVKCDVCEVY 329
           H  R+HP  D R +   +CEV+
Sbjct: 118 HFVRKHPAKDERTLSKHLCEVF 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,320,552
Number of Sequences: 37544
Number of extensions: 240940
Number of successful extensions: 482
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)