Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M06
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...    27   5.4  
AC024208-2|AAF36055.1|  204|Caenorhabditis elegans Hypothetical ...    26   7.2  
U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 286 PGCLLAI*PATLLMDNSIRHRLH 218
           PG LL+  PATL  D+S RH  H
Sbjct: 757 PGVLLSPFPATLEEDSSPRHHRH 779


>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 240 LSIRSVAGHIARRHPGADVRKVKCDVCE 323
           LS R    H  RR+P  + R + C +CE
Sbjct: 93  LSSRFRGEHALRRYPSGEERCIACKLCE 120


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 240 LSIRSVAGHIARRHPGADVRKVKCDVCE 323
           LS R    H  RR+P  + R + C +CE
Sbjct: 93  LSSRFRGEHALRRYPSGEERCIACKLCE 120


>AC024208-2|AAF36055.1|  204|Caenorhabditis elegans Hypothetical
           protein Y75B7B.2 protein.
          Length = 204

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 251 PDG*LHQAQIAHHPVSLTRIGHDNL 177
           PDG + ++Q+  H V+  R+GH  L
Sbjct: 62  PDGPISESQLEFHLVTAVRMGHREL 86


>U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical
           protein R08E3.4a protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 201 KGNRVMCNLCLMELSIRSVAGHIARRHPGADVRKVKCDVCEV-YVTRSRMNRH 356
           +G    C++C M+ S ++       RH G  V+  +C  C+  +  + +M  H
Sbjct: 129 QGQMYQCDICKMQFSQKANMHRHRMRHSG--VKPYECRFCKKRFFRKDQMQEH 179


>U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical
           protein R08E3.4b protein.
          Length = 480

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 201 KGNRVMCNLCLMELSIRSVAGHIARRHPGADVRKVKCDVCEV-YVTRSRMNRH 356
           +G    C++C M+ S ++       RH G  V+  +C  C+  +  + +M  H
Sbjct: 129 QGQMYQCDICKMQFSQKANMHRHRMRHSG--VKPYECRFCKKRFFRKDQMQEH 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,151,949
Number of Sequences: 27780
Number of extensions: 195866
Number of successful extensions: 342
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)