Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M06
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.28 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 219 CNLCLMELSIRSVAGHIARRHPGADVRKVKCDVCE-VYVTRSRMNRH 356
           C  C    S++       R H     R  KCDVCE  +    +++RH
Sbjct: 122 CEYCSKSFSVKENLSVHRRIH--TKERPYKCDVCERAFEHSGKLHRH 166


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 225 LCLMELSIRSVAGHIARRHPGADVRKVKCDV 317
           + +M  S   V  ++ + HP AD+    C+V
Sbjct: 508 IVMMNFSKNPVTVNLTKLHPPADLVVYACNV 538


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = +3

Query: 150 PGRVEDKPYEVIVTNPGKGNRVMCNLCLMELSIRSVAGHIARRH 281
           P   E   +  +V     G+ + CN+     +     G +A+RH
Sbjct: 351 PSTSECGEFRSVVVQKRNGSMIECNISPRSSADSCQVGIMAQRH 394


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 29  LTRVIPKIVSGS 64
           +TRVIP++ SG+
Sbjct: 234 ITRVIPQVCSGN 245


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 29  LTRVIPKIVSGS 64
           +TRVIP++ SG+
Sbjct: 234 ITRVIPQVCSGN 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,352
Number of Sequences: 438
Number of extensions: 2536
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)