Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M05
         (262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    73   8e-15
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    71   3e-14
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    28   0.24 
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   1.7  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   1.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   2.2  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   2.2  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    24   2.9  
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    24   2.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   3.8  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    23   6.7  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    23   6.7  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    23   8.8  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    23   8.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    23   8.8  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    23   8.8  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   8.8  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    23   8.8  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    23   8.8  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    23   8.8  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 72.5 bits (170), Expect = 8e-15
 Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
 Frame = +3

Query: 9   SVYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMARPQNPRA 182
           SVY+ + +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD  +  NP A
Sbjct: 57  SVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRD-GKKVNPTA 114


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 70.9 bits (166), Expect = 3e-14
 Identities = 34/59 (57%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
 Frame = +3

Query: 9   SVYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMARPQNPRA 182
           SVY+ + +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R  NP A
Sbjct: 57  SVYSEYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKR-VNPAA 114


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +1

Query: 43  MQNSTTACHARSI-AKWCVTDLRRTGGSVHHPRATSQGIWRVHRILVPNSARGKDSKASA 219
           M+ + +   AR +  KW + + RR  GSV   RA   G      I      RG  +    
Sbjct: 1   METNGSFSGARLVDGKWIIPESRRKDGSVRRERAVKPGYTAPEDIKRYRPGRGNFASLE- 59

Query: 220 KQPQKTQKKKEGS 258
           KQ +K Q   + S
Sbjct: 60  KQMKKLQLSNDAS 72


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 120 IRTPPKSNFPRDMAR 164
           IRTP KS FP+D A+
Sbjct: 157 IRTPKKSYFPKDHAK 171


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  CVSCAIHSKVVRNRSKKDRRIRTPPKS 140
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +1

Query: 73  RSIAKWCVTDLRRTGGSVHHPRATSQG---IWRVHRILVPNSARGKDSKASAKQPQKTQK 243
           +S  +W  T    TGG         +    I R+H++L P   R       A+ P K +K
Sbjct: 600 KSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEK 659


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 133 PRATSQGIWRVHRILVPNSARGKDSKASAKQPQKTQKKKEGS 258
           PRA +  IW V  + V +S +    +A+A   ++++ ++  S
Sbjct: 741 PRAYASSIWEVANVSVIDSLKNHLERATAYAEKRSEDERWSS 782


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 137 LGWCTDPPVLLRSVTHHFAMDRA*HAVVEFCIQLGK 30
           +G     PV     T H ++++  HAV+  C +L +
Sbjct: 136 VGQILQVPVFPEESTFHLSIEQYLHAVLSLCSELAR 171


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 181 PNSARGKDSKASAKQPQKTQKKK 249
           P + +  DSK+ AK P+K  K K
Sbjct: 14  PANEKSNDSKSEAKAPKKGAKTK 36


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 37  SCMQNSTTACHARSIAKWCVTDL 105
           SCM+N   A   R I K+  TDL
Sbjct: 62  SCMRNEEPASKQREIEKFLRTDL 84


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GIWRVHRILVPNSARGKDSKASAKQPQKT 237
           G+    ++ +PN    +  KAS + PQ +
Sbjct: 74  GVSEEKKVAIPNKNSNQQKKASKQNPQNS 102


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 145 SQGIWRVHRILVPNSARGKDSKASAKQPQKTQKKKE 252
           ++ +  V ++ +P+S   K S  + K  +  QKKK+
Sbjct: 13  TETVLNVSQVQIPSSCDRKASLETLKTKKNAQKKKK 48


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 135 KSNFPRDMARPQNPRAE 185
           ++NFP D   P+NP+ +
Sbjct: 130 QANFPTDQEDPRNPQLD 146


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 184 NSARGKDSKASAKQPQKTQKKKEGS 258
           NSA GKD KA      +   KK  S
Sbjct: 268 NSAEGKDPKAFFNTDDEDNMKKSSS 292



 Score = 22.6 bits (46), Expect = 8.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 239 WVFCGCL 219
           W+FCGC+
Sbjct: 517 WIFCGCM 523


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 153 PLGSCSWV 130
           PLG+CSWV
Sbjct: 690 PLGNCSWV 697


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 33  PKLYAKLHYCVS-CAIHSKVVRNRSKKDRRIRTPPKSNF 146
           PKLY K H+  S  A  +K   +  K    IR+P +  F
Sbjct: 647 PKLYEKFHFTTSGVAQRAKKTVDAYKDIPYIRSPVRRAF 685


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 146 EVALGWCTDPPVLLRSVTHHFAMDRA*HAVVEFCIQLGKL 27
           ++ + WC D  VLL S+     +D    ++ +F +Q GK+
Sbjct: 55  KIKIEWCKDTSVLLSSIC-VMLLD----SIHDFLVQQGKI 89


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 148 QGIWRVHRILVPN 186
           Q IW ++R+L+PN
Sbjct: 74  QTIWNLNRMLIPN 86


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 239 WVFCGCL 219
           W+FCGC+
Sbjct: 506 WIFCGCM 512


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 239 WVFCGCL 219
           W+FCGC+
Sbjct: 518 WIFCGCM 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.126    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,135,080
Number of Sequences: 5004
Number of extensions: 20813
Number of successful extensions: 62
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)