Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_M05
(262 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 62 5e-11
01_07_0365 - 43071448-43071568,43071673-43072514 29 0.39
04_03_1005 + 21646323-21646403,21646724-21646906,21648014-216481... 29 0.68
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386... 28 1.2
01_06_1537 - 38092307-38092741 28 1.2
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 27 2.1
04_01_0557 + 7168446-7168998,7169107-7169141 27 2.1
01_04_0046 - 15400890-15403097 27 2.1
11_01_0564 - 4447078-4448519,4449465-4449711 27 2.7
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 26 3.6
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 26 3.6
12_02_1116 + 26189651-26190544 26 4.8
10_08_0733 - 20183271-20183725,20183860-20183935,20184202-20184210 26 4.8
05_04_0380 + 20792090-20792662 26 4.8
02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563... 26 4.8
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 26 4.8
01_01_0532 - 3913156-3913203,3914720-3915274 26 4.8
12_02_0794 + 23206796-23207590,23207620-23208148,23208444-232084... 25 6.3
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 25 6.3
09_02_0216 + 5864127-5864236,5864962-5865062,5865985-5866046,586... 25 6.3
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448... 25 6.3
10_03_0002 - 6858257-6861205 25 8.4
08_02_0407 + 16818621-16819403 25 8.4
07_03_1436 - 26543846-26546806 25 8.4
06_01_1049 + 8257930-8258316 25 8.4
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 25 8.4
03_02_0127 + 5777564-5779879 25 8.4
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 62.5 bits (145), Expect = 5e-11
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +3
Query: 12 VYTSFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMARPQ 170
V+ + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+ F R + P+
Sbjct: 58 VHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109
>01_07_0365 - 43071448-43071568,43071673-43072514
Length = 320
Score = 29.5 bits (63), Expect = 0.39
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 10 QYILHSNFPSCMQNSTTAC-HARSIAKWCVTDLRRTGGSVHHPRATSQGIWRVHRILVPN 186
+Y+L + P NS T H R + + + D RT V P A Q + + I P
Sbjct: 108 EYVLKGS-PLLHHNSNTPPQHRRCMTSFDLADYHRTTDPVPVPAAAQQSLIGIDEISPPP 166
Query: 187 SARGKDSKASAKQPQKTQKKKEGSG 261
S+ D + K QK++E G
Sbjct: 167 SSSSPDDTTTQLVTLK-QKQQEEDG 190
>04_03_1005 +
21646323-21646403,21646724-21646906,21648014-21648133,
21648458-21648649,21648848-21649153,21650004-21650714
Length = 530
Score = 28.7 bits (61), Expect = 0.68
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Frame = -3
Query: 251 SFFFWVFCGCLAEAFESFPRAEFGTRILWTRHIP---WEVALGWC 126
SFF W +AE SFP G+ W H+ W WC
Sbjct: 70 SFFTWFVGFAMAEICSSFPTT--GSLYFWAAHLAGPVWGPLASWC 112
>03_06_0015 -
31036091-31036202,31037839-31037916,31038408-31038655,
31038744-31038792,31038919-31039890,31040059-31040894
Length = 764
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 127 HHPRATSQGIWRVHRILVPNSARGKDSKASAKQPQ 231
H + G+W+ HR ++ N G S + A+ PQ
Sbjct: 422 HDGLVATNGVWKGHRDVMENHPLGVYSSSHARHPQ 456
>01_06_1537 - 38092307-38092741
Length = 144
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 103 LRRTGGSVHHPRATSQGIWRVHRILVPNSARGKDSKASAKQPQKTQKKKE 252
+RR P + + G WR+H + + A G+ + +A Q + ++++E
Sbjct: 67 VRRAFSMRRQPSSFADGYWRIHDDMDGDDAAGEHQEQAAFQDGEQKRREE 116
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 204 VLPSCRIRHEDSVDAPYPLGSCS 136
+LPS +RHE S P P+ S S
Sbjct: 303 LLPSSSLRHEPSAKRPLPISSSS 325
>04_01_0557 + 7168446-7168998,7169107-7169141
Length = 195
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Frame = -3
Query: 197 PRAEFGTRILWTRHI-------PWEVALGWCTDPPVLLRS 99
PR E G I+WTR P A GW + PVL+ S
Sbjct: 115 PRREEGHMIVWTRQSGNALRRSPSSSAFGWSSSSPVLVLS 154
>01_04_0046 - 15400890-15403097
Length = 735
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 230 CGCLAEAFESFPRAEFGTRILWTRHIPWEVALG 132
CGC+A+A E F + +LWT + V G
Sbjct: 369 CGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNG 401
>11_01_0564 - 4447078-4448519,4449465-4449711
Length = 562
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 31 FPSCMQNSTTACHARSIAKWCVTDLRRTGGSVHHPR 138
F CM+ + KW V D+ GGS P+
Sbjct: 334 FSKCMEAMENCLRDAKVDKWSVDDVVLVGGSTRIPK 369
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +1
Query: 10 QYILHSNFPSCMQ----NSTTACHARSIAKWCVTDLRRTGGSV--HHPR 138
+Y+ HS FP C + + +A+++ K DL TGG + H PR
Sbjct: 1143 EYLGHSTFPDCCKVLCTQTDNLYNAKNMLKSNNLDLSSTGGKLPPHGPR 1191
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 IAKWCVTDLRRTGGSVHHPRATSQGIWR--VHRILVPNSARGKDSKASAKQPQKTQKKKE 252
+ + CV +L R GGS P A + + + + LVP S +++ A P
Sbjct: 30 VRRRCVAELSRDGGSAQRPLAPAPLVKQPVLPTFLVPTSTPPAPTQSPAPAPTPPPLPDS 89
Query: 253 GSG 261
G G
Sbjct: 90 GVG 92
>12_02_1116 + 26189651-26190544
Length = 297
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 78 HSKVVRNRSKKDRRIR 125
HSKVV +R +DRR+R
Sbjct: 50 HSKVVTSRGLRDRRVR 65
>10_08_0733 - 20183271-20183725,20183860-20183935,20184202-20184210
Length = 179
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 202 DSKASAKQPQKTQKKKEGSG 261
+S AK+P+K ++KK+G G
Sbjct: 66 ESVGPAKEPEKKEEKKDGGG 85
>05_04_0380 + 20792090-20792662
Length = 190
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 103 LRRTGGSVHHPRATSQG---IWRVHRILVPNSARGKDSKASAKQPQKTQKKKE 252
+RR HP +G WR+H + +S D+ A+A ++ + KKE
Sbjct: 90 VRRAFSMRRHPAGLGKGDGYYWRIHDNMDGDSDDDGDNPAAAAAEEEERDKKE 142
>02_04_0654 -
24755339-24755408,24755488-24755624,24756243-24756326,
24756929-24756944,24758035-24758405
Length = 225
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 93 RNRSKKDRRIRTPPKSNFPRDMARPQNPR 179
R S++ R PP FP ARPQ PR
Sbjct: 24 RPSSEEQRAPPPPPPPLFPAMSARPQPPR 52
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 81 SKVVRNRSKKD-----RRIRTPPKSNFPRDMARPQNPRAEFGTREGLKG 212
S+VV N KK R + P + PR R + R FG R+G +G
Sbjct: 84 SEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRG 132
>01_01_0532 - 3913156-3913203,3914720-3915274
Length = 200
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 96 NRSKKDRRIRTPPKSNFPRDMARPQNPRAEFGTREGLKGLG*AAAEDP 239
N ++ + + D+A P EFG EGL+ + A DP
Sbjct: 43 NAARNGAAVEAARRDGLAVDLAEVAFPGPEFGVPEGLENMDQLADADP 90
>12_02_0794 +
23206796-23207590,23207620-23208148,23208444-23208468,
23208775-23208837,23209136-23209157,23209369-23209482
Length = 515
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 97 TDLRRTGGSVHHPRATSQGIWRVHRI 174
T L + HH R+ S WR+HR+
Sbjct: 192 TSLTYASSTNHHERSPSPVQWRMHRL 217
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 176 RILWTRHIPWEVALGWCTDPPV 111
R+LW+ ++ VA G T PPV
Sbjct: 2586 RVLWSTNVTAGVAAGRSTSPPV 2607
>09_02_0216 +
5864127-5864236,5864962-5865062,5865985-5866046,
5866163-5866351,5866487-5866591,5866808-5866867,
5867636-5867713,5867881-5867938,5868286-5868554,
5872243-5872473,5872543-5872554
Length = 424
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 178 VPNSARGKDSKASAKQPQKTQKKKEGS 258
+PNSA+ + + K P+K +KEGS
Sbjct: 140 LPNSAKDNKNSSLIKGPKKCGLQKEGS 166
>05_07_0027 +
27140626-27141457,27143101-27143901,27144838-27144873,
27145133-27145420,27145836-27146289,27146520-27146964
Length = 951
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 149 WEVALGWCTD 120
W+V LGWC+D
Sbjct: 501 WKVGLGWCSD 510
>10_03_0002 - 6858257-6861205
Length = 982
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 93 RNRSKKDRRIRTPPKSNFPRDMARPQNP 176
R+R +R + +PP + R + RP++P
Sbjct: 360 RSRGHDERSVHSPPDHHRERRVERPRSP 387
>08_02_0407 + 16818621-16819403
Length = 260
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 90 PLCYGSRMTRSSGVLHTAWEVGMKYILT 7
P C G+ + R+ G+ ++GM++I+T
Sbjct: 112 PSCRGACLRRAGGLNKAQMKLGMRHIMT 139
>07_03_1436 - 26543846-26546806
Length = 986
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 93 RNRSKKDRRIRTPPKSNFPRDMARPQNP 176
R+R +R + +PP+ + R + RP +P
Sbjct: 363 RSRDHGERSVHSPPERHRERRVERPHSP 390
>06_01_1049 + 8257930-8258316
Length = 128
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 120 IRTPPKSNFPRDMARPQ 170
++ PP +N PR++ARP+
Sbjct: 36 LQKPPATNRPRELARPR 52
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 21/26 (80%)
Frame = +1
Query: 184 NSARGKDSKASAKQPQKTQKKKEGSG 261
NSA G+ S S++QP +++++++G+G
Sbjct: 118 NSAGGRAS--SSRQPHRSRRERDGNG 141
>03_02_0127 + 5777564-5779879
Length = 771
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 105 KKDRRIRTPPKSNFPRDMARPQNPRAEFGTREGL 206
K+ + + P SN PR + + +EF + EGL
Sbjct: 633 KRGKIVELQPDSNGPRKLKFRRRSASEFSSSEGL 666
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.126 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,164,437
Number of Sequences: 37544
Number of extensions: 168421
Number of successful extensions: 534
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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