Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_M04
         (112 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    25   9.4  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    25   9.4  

>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 80  EWNEAPPARREETCARY 30
           EWNE+P +R E+  ++Y
Sbjct: 565 EWNESPESRLEQFTSQY 581


>U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical
           protein F56D2.5 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 80  EWNEAPPARREETCARY 30
           EWNEA  A +EE   RY
Sbjct: 328 EWNEADEAGKEEMYKRY 344


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
           receptor TOL-1 protein.
          Length = 1221

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 86  NVEWNEAPPARREETC 39
           N+  NE P  RREE+C
Sbjct: 176 NISSNELPSLRREESC 191


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
           (drosophila) family protein 1 protein.
          Length = 1221

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 86  NVEWNEAPPARREETC 39
           N+  NE P  RREE+C
Sbjct: 176 NISSNELPSLRREESC 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,260
Number of Sequences: 27780
Number of extensions: 19997
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 12,740,198
effective HSP length: 18
effective length of database: 12,240,158
effective search space used: 220322844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)