Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L24
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    28   0.27 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   0.63 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    23   5.9  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    23   5.9  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     23   7.8  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    23   7.8  

>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 0.27
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 163 TGRTLTPVETTTFIRNYSVEEPELVPDILAVFALYLK 273
           TG+  +PVET +F+ +  + + E VPDIL      LK
Sbjct: 37  TGKA-SPVETASFLASLHLTKAEEVPDILMQTVQILK 72


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 189 LHRSQCPSRRGMKSGIEYHQLWVVQSPPA 103
           L+   C   + +K GIE    W+ QSP A
Sbjct: 475 LNEQYCLVMKDLKDGIEMKPKWLTQSPAA 503


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 219 NRIIPNKSRRLHRSQCPSRRGMKSGIE 139
           N +I + SRR+ RSQ  + +  +SG E
Sbjct: 715 NMVIDSGSRRVTRSQNATSQSQESGSE 741


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 154 HSTTGRTLTPVETTTF 201
           HS+T   L+P++TT+F
Sbjct: 238 HSSTASLLSPLDTTSF 253


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 112 RLYNPQLMILYS*LHSTTGRTLTPVETTTFIRNYSVEEPELVPDILAVFALYL 270
           RLYN QL ++YS L    G+    +        Y +++  L   +  V   +L
Sbjct: 447 RLYNWQLRVIYSLLQLFRGKKRNVLRNRIDSYEYDLDQLLLGTILFTVLIFFL 499


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 156 MKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRE 43
           +K+G ++ Q+W   +PP+     L ++ L P   +  E
Sbjct: 254 IKTGFKF-QIWKAHNPPSSSKFILEQKGLPPESNLSSE 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,450
Number of Sequences: 5004
Number of extensions: 14260
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)