Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L24
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0106 - 13460882-13462086,13463452-13463629 28 1.2
01_06_0373 - 28841462-28842850 28 1.2
06_03_0400 - 20420257-20421837 27 2.7
03_01_0028 - 274231-275424 27 2.7
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 27 2.7
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 26 3.6
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 26 3.6
02_01_0243 - 1601977-1602834,1602857-1603063 26 4.7
01_06_0034 + 25769436-25769701,25769749-25769887 26 4.7
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 26 4.7
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 25 6.3
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 25 6.3
04_04_0340 + 24517562-24520318 25 6.3
02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703 25 6.3
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 25 6.3
05_06_0148 + 25989595-25990956 25 8.3
02_04_0391 + 22576839-22577387 25 8.3
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 135 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 46
H+L V+ PA R R + PL P P R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 129 LWVVQSPPADRAVRLSREPLEP 64
LWVV+SPP+D + +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307
>06_03_0400 - 20420257-20421837
Length = 526
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 171 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 76
P R+GM I+Y W + PA+ ++ R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445
>03_01_0028 - 274231-275424
Length = 397
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 91 NSPISWRRLYNPQLMILYS*LHSTTGRTLTPVETTTFIRNYSVEEPELVPD 243
N P+ + +Y P+L + + ST RT++P+ S +P+L+ D
Sbjct: 257 NLPLYGKVVYVPELKLWFG--FSTEARTMSPLAAADLSTMDSHSQPQLIGD 305
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -2
Query: 192 RLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRP 16
+ HRS+ ++ G S + L +SP R SR P PP ++ST + RRP
Sbjct: 18 KTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQPP--KDSTARSGRRP 74
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 114 SPPADRAVRLSREPLEPGPPIQRESTGN 31
SPP R S EP + PP++R++ G+
Sbjct: 295 SPPRRRTRHDSHEPKDKLPPLKRQALGD 322
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 111 PPADRAVRLSREPLEPGPPIQRESTGNAY 25
PP+D R EP P PP +G AY
Sbjct: 316 PPSDYVRRRLLEPPRPPPPAAVNPSGKAY 344
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 156 MKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRPLV 10
MKS Y +W+ + + VRL R L PG E + Y + ++
Sbjct: 249 MKSTEPYMDVWIAAAAGGENWVRLLRVELPPGHYYSGEVKPHGYGKAVL 297
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 90 RLSREPLEPGPPIQRESTGNAYRR 19
RL EPL P P Q E G A +R
Sbjct: 64 RLDAEPLSPPPSRQHEHQGEASQR 87
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 231 LRFFNRIIPNKSRRLHRSQCPSR 163
+ F++R+IPN SRR +R + S+
Sbjct: 349 ISFWSRMIPNPSRRRYRRKAHSK 371
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -2
Query: 195 RRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPIQRESTGNAYRRP 16
R H +R G + G E + PP RA L P PG P ++ G RP
Sbjct: 816 RSAHPHPVSTRPGREQGGEAPEPNDGPRPPTTRAGPLPACPTVPGAPDPQDGPGATAGRP 875
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 144 IEYHQLWVVQSPPADRAVRLSREPLEPGPPIQR 46
++ H+L V +S AD AVR+S + G ++R
Sbjct: 242 VDEHRLSVARSLGADAAVRVSARAEDVGEEVER 274
>04_04_0340 + 24517562-24520318
Length = 918
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 159 GMKSGIEYHQLWV 121
GMK +EYH++WV
Sbjct: 104 GMKWAMEYHEMWV 116
>02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703
Length = 379
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/55 (25%), Positives = 21/55 (38%)
Frame = -2
Query: 222 FNRIIPNKSRRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGP 58
FN + SR L C + YH + + +P A R R+ + GP
Sbjct: 71 FNLTLRVASRSLLSRACVGVSSTAVAVSYHGVRLASAPVAPRVCAARRKSADAGP 125
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 131 SCGLYSLRQLIGLFV-CHGSRSSQGHQYNESQREMHIAG 18
S G+ R+++G C+G + GH+ E E+H G
Sbjct: 32 SFGMAPTRRVLGASAPCYGKSLADGHEEEEFTIELHHGG 70
>05_06_0148 + 25989595-25990956
Length = 453
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 162 RGMKSGIEYHQLWVVQSPPADRAVRLSREPLEP 64
RG+++ + LWVV+SPP + + S EP
Sbjct: 273 RGLENS-GHRFLWVVRSPPPEDPAKFSLPRSEP 304
>02_04_0391 + 22576839-22577387
Length = 182
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 111 PPADRAVRLSREPLEPGPPIQRESTGNA 28
PP V + R P P P I + TG A
Sbjct: 115 PPPQALVAMERTPNAPDPSIFSDDTGTA 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,339,203
Number of Sequences: 37544
Number of extensions: 103166
Number of successful extensions: 298
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -