Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L24
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   6.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   8.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   8.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 222 FNRIIPNKSRRLHRSQCPSRRGMKSGIEYHQLW 124
           F   +P KS R   S+C  R    SG+ + ++W
Sbjct: 5   FVAFLPVKSFR--ESRCSVRCSAASGLRWFEIW 35


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 157 STTGRT--LTPVETTTFIRNYSVEEPELV 237
           ST+G +  LTPV    +++  S E+ EL+
Sbjct: 311 STSGSSGILTPVSPYGYVKPISPEQEELI 339


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 115 LYNPQLMILYS*LHSTTGRTLTP 183
           LY PQ M +   L   TGR++ P
Sbjct: 369 LYQPQGMNILGDLIEGTGRSVNP 391


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 78  EPLEPGPPIQ 49
           EPL P PPI+
Sbjct: 373 EPLPPPPPIR 382


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 195 RRLHRSQCP 169
           R+ H SQCP
Sbjct: 305 RKSHESQCP 313


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 22  PAACRPR 2
           P+ACRPR
Sbjct: 519 PSACRPR 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,936
Number of Sequences: 438
Number of extensions: 1202
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)