Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L23
         (187 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   3.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   3.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          18   9.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      18   9.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    18   9.5  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 145 IVLPVKIFFFKPNL 104
           I+LPV I FF  +L
Sbjct: 104 IILPVAISFFNDDL 117


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 145 IVLPVKIFFFKPNL 104
           I+LPV I FF  +L
Sbjct: 104 IILPVAISFFNDDL 117


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 145 IVLPVKIFFFKPNL 104
           I+LPV I FF  +L
Sbjct: 104 IILPVAISFFNDDL 117


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 28  LFCYVNFF*FNLV 66
           L C+V FF  N+V
Sbjct: 282 LICWVPFFCVNIV 294


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  KIKNTFKYYYFLLD*V*RKIFLQAV 141
           K+K  +KY   +LD +   IF  AV
Sbjct: 506 KVKEDWKYVAMVLDRLFLWIFTLAV 530


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  KIKNTFKYYYFLLD*V*RKIFLQAV 141
           K+K  +KY   +LD +   IF  AV
Sbjct: 506 KVKEDWKYVAMVLDRLFLWIFTLAV 530


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 130 KIFFFKPNLKENN 92
           K+FFF  ++ E+N
Sbjct: 619 KMFFFLSSMDESN 631


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 130 KIFFFKPNLKENN 92
           K+FFF  ++ E+N
Sbjct: 619 KMFFFLSSMDESN 631


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 87  ILLFSFRLGLKKNIFTGSTINN 152
           IL+   R+GLK    T  T+N+
Sbjct: 228 ILVVYTRMGLKIRNSTKDTLNS 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,403
Number of Sequences: 438
Number of extensions: 485
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)