Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L22
(276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 2.0
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 2.6
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 25 2.6
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 24 3.5
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 24 4.6
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 24 4.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 23 6.1
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 23 8.0
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 8.0
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 23 8.0
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 2.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 101 RDSPTSDSNSVASVEIKKESSLYEQLCSV 187
RD N+ E+KK + L E LC V
Sbjct: 2438 RDLTVKSLNNSQQKEVKKSTGLLESLCKV 2466
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 24.6 bits (51), Expect = 2.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 FVE-DRVYTERGAEEKLCTYRERSLLLSDPGEGLP 111
FV+ D YT + L YRE+S+ SD G+P
Sbjct: 122 FVDFDERYTRFANKYSLYLYREKSVEESDEPSGIP 156
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 24.6 bits (51), Expect = 2.6
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = +2
Query: 20 TEFIQKEERRKSFAHIENDHCYLATPARDSPTSDSNSVASVEIKKESSLYEQLCSVTYRF 199
+E + R + A++EN + R++ ++ A+ E + + + CS T +
Sbjct: 791 SEIFEYYAERTTGAYVENKDATVILHLREAEDDEAAMWAAKECCESVNNFNVPCSATIQN 850
Query: 200 DSVRAGVNYMLKRI 241
D V N + KR+
Sbjct: 851 DMVVCRSNKVSKRL 864
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 3.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 268 ITSVVTYQRYPLQHVINTSSYTIEPVCH 185
I++ + + P+ +IN YTIE + H
Sbjct: 460 ISTCIRHNLKPIIFIINNDGYTIERLIH 487
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 23.8 bits (49), Expect = 4.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 257 GHLSTVSSSACN*HQLVHYRTCMSPNTTVHITNFP 153
GH S S + Q+ H R + P+ V+ FP
Sbjct: 164 GHKSGFSGPQIHVKQIGHARLILEPHNEVYYITFP 198
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 4.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 26 FIQKEERRKSFAHIENDHCYLATPARDSPTSDSNSV 133
+ KE+R+K E + A+ AR P D SV
Sbjct: 168 YADKEQRKKLREEFERRNRMFASSARIQPNEDVQSV 203
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 98 ARDSPTSDSNSVASVEIKKESSLYEQLCSVTYRFDSVRAGVNY 226
++ +PTS S+ S +K+ SS +V+Y SV + Y
Sbjct: 646 SQTTPTSSSSITGSQSLKETSSPAYVSSTVSYTSSSVDSSSTY 688
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 75 SFSICAKLFLRSSFCINSVLNKPS 4
S+ KL +R C NSVL P+
Sbjct: 71 SYGNSEKLVIRPCICCNSVLRYPA 94
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 273 SGSRAWSLINGILFSM*LTPARTLSNLYVTEHN 175
SGS ++N ++ LTP+ T +N+ V++ N
Sbjct: 91 SGSLEIPILNSATSNIRLTPSDTYNNIPVSDTN 123
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 158 SSLYEQLCSV--TYRFDSVRAGVNYMLKRIPLISD 256
+ +YE+L + +S R YM KR+P +SD
Sbjct: 147 TKVYEELARKYPQHSLESWRQHYKYMKKRLPPVSD 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,460
Number of Sequences: 5004
Number of extensions: 15109
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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