Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L22
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458...    30   0.23 
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107           28   0.93 
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405...    26   3.7  
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113...    26   5.0  
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750...    25   6.5  
01_06_1468 + 37574124-37574180,37574275-37574346,37574437-375745...    25   8.7  
01_01_0014 + 84379-84600,84737-84830,84935-85086,85212-85299,853...    25   8.7  

>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
            34045969-34046092,34046168-34046294,34046821-34046882,
            34046972-34048023,34048167-34048556,34048667-34052628,
            34052710-34052796,34052885-34053004,34053096-34053152
          Length = 2122

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 29   IQKEERRKSFAHIENDHCYLATPAR--DSPTSDSNSVASVEIKKES 160
            +  EE  +SF H  ++    ATP    D P SDSN V+S  +  ES
Sbjct: 1151 VMTEEDFRSFCHEYHEMDLTATPESIDDKPASDSNVVSSSLVTSES 1196


>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
          Length = 151

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 32  QKEERRKSFAHIENDHCYLATPARDSPTSDSNSVASVEIKKE 157
           Q++ +R+     + DH   A+  +DS +S SN  +S+++ K+
Sbjct: 83  QQQYQRQQQQQQQEDHSDAASSVKDSSSSSSNKSSSLQVVKK 124


>04_04_0632 +
           26738969-26739350,26739535-26739543,26739674-26740545,
           26743048-26743098,26743966-26744127,26744278-26744519,
           26744772-26744859,26744964-26745158
          Length = 666

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 185 PNTTVHITNFPF*FQHWQHYYYHW 114
           PN  ++  N P  ++ W H +Y W
Sbjct: 122 PNNWMNDPNGPLYYKGWYHLFYQW 145


>05_03_0425 -
           13808840-13809414,13809552-13809765,13810268-13811317,
           13811616-13811687,13812075-13812334,13812647-13812731
          Length = 751

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +2

Query: 32  QKEERRKSFAHIENDHCYLATPARDSPTSDSNSVASVEIKKESSLYEQLCSVTYRFDSVR 211
           Q+  +R+     ++ HC LAT AR    + + ++ S  ++   +L   L ++      +R
Sbjct: 150 QQLNQREMHREADHHHCLLATLARHRRLAAAATLFSSTLRTARALNSLLAAICSSPAFLR 209

Query: 212 AGVNYMLKRIPLISDHA 262
                +L   P +S +A
Sbjct: 210 FAPKVLLLAAPSVSPNA 226


>01_01_0956 +
           7505206-7505322,7505860-7506723,7506841-7507260,
           7508091-7508342,7508696-7508953,7509798-7509877,
           7509959-7510070,7510492-7510541,7511070-7511171,
           7511215-7511276,7511888-7511928
          Length = 785

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 170 EQLCSVTYRFDSVRAGVN 223
           ++LC +T   DSVR G+N
Sbjct: 323 DELCQITGELDSVRKGLN 340


>01_06_1468 +
           37574124-37574180,37574275-37574346,37574437-37574513,
           37574897-37574978,37576005-37576069,37576313-37576354,
           37576452-37576503,37576631-37576679,37576784-37576797,
           37576942-37577049,37577129-37577272,37577421-37577810
          Length = 383

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 275 SQDHERGHLSTVSSSACN*HQLVHYRTCMSPNTTVHITNFP 153
           ++D+   HL+  +S+        +YR C +P   +HI+  P
Sbjct: 279 ARDYSTSHLNRFNSNVVK-----NYRHCCAPTKMIHISALP 314


>01_01_0014 +
           84379-84600,84737-84830,84935-85086,85212-85299,
           85348-86681,87291-87398,87500-87583
          Length = 693

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 71  NDHCYLATPARDSPTSDSNSVASVE 145
           +DHC   TP     TS S SV  +E
Sbjct: 511 SDHCSTGTPLTVEETSSSVSVVHIE 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,283,598
Number of Sequences: 37544
Number of extensions: 88557
Number of successful extensions: 278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)