Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L22
         (276 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27312-11|AAA68254.1|  461|Caenorhabditis elegans Forkhead trans...    28   0.82 
Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical pr...    28   1.1  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    27   2.5  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    25   5.8  
AC006791-7|AAF60740.2|  448|Caenorhabditis elegans Hypothetical ...    25   5.8  
Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical pr...    25   7.7  
U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    25   7.7  

>U27312-11|AAA68254.1|  461|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 5 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 218 HQLVHYRTCM-SPNTTVHIT-NFPF*FQHWQHYYY 120
           +QL+   TC+ SP+  +  T N+ F   HW++Y Y
Sbjct: 177 YQLLSALTCLNSPDGMISTTENYSFILHHWRYYRY 211


>Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical
           protein C34B7.2 protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   HEGLLRTEFIQKEERRKSFAHIENDHCYLATPARDSPTSDSNSVASVEI 148
           HEG+L T+F++  E    F   E   CY++          +NS+ S+ +
Sbjct: 357 HEGVLHTQFLKNIEYLNQFLPNEEKLCYISFDVARC-NKAANSMPSINV 404


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 11  LLRTEFIQKEERRKSFAHIENDHCYLATPARDSPTSDSNSV 133
           +L  E + ++E R+ F H    H Y+ + + DS +S  NS+
Sbjct: 286 VLMEEGVMEKEIREVFNHRPPGHNYMRSNSSDSSSSAENSM 326


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 29  IQKEERRKSFAHIENDHCYLATPARDSPTSDSNSVASVEIKKESSL 166
           + +EE++     I +++ YL  P RD   +D  +    EI +ES+L
Sbjct: 447 LTEEEKKGKDEEITHENLYLCPPIRD---NDYGNYEDEEITEESAL 489


>AC006791-7|AAF60740.2|  448|Caenorhabditis elegans Hypothetical
           protein Y4C6A.1 protein.
          Length = 448

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +2

Query: 95  PARDSPTSDSNSVASVEIKKESSLYEQLCSVTYRFDSVRAGVNYMLK 235
           P ++    D + + +  +  + + Y   C  T  FDS+   +NY +K
Sbjct: 123 PIQEEGKEDEDKIRTRNVVIKRAGYLFFCETTRSFDSIFELINYYMK 169


>Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical
           protein R03G8.6 protein.
          Length = 747

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = +2

Query: 41  ERRKSFAHIENDHCYLATPARDSPTSDSNSVASVEIKKESSLYEQLCSVTYRFDSVRAGV 220
           E R   A +  +   L   A DS   ++NS+   E+     +YE++       +  R  V
Sbjct: 525 EARVQMAWLNRNSTSLELVADDSVIINANSIGYYEVLYSDKMYEKIAE-QVAINVSRYSV 583

Query: 221 NYMLKRIPLISDHARD 268
           N + + +  +  ++RD
Sbjct: 584 NSLRRTLHDVFRYSRD 599


>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 119 DSNSVASVEIKKESSLYEQLCSVTYRFDSVRAGVNYMLKR 238
           D    A V  K  + L+EQLCS T    ++   V Y+L +
Sbjct: 629 DKKGRAEVGAKITAELHEQLCSQTEPATTLLLSVLYILAK 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,560,406
Number of Sequences: 27780
Number of extensions: 82981
Number of successful extensions: 244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)