Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L22
         (276 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   4.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   4.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   8.6  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 258 WSLINGILFSM*LTPARTLSNLYVTEHNCSYN 163
           W    GI++   L P RT++++   EH    N
Sbjct: 72  WWDHKGIVYFELLPPNRTINSVVYIEHLTKLN 103


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 5   EGLLRTEFIQKEERRKSFAHIEND 76
           E +LR E ++KE++      + ND
Sbjct: 352 EAVLRIESVKKEDKGMYQCFVRND 375


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 8/36 (22%), Positives = 13/36 (36%)
 Frame = -2

Query: 137 WQHYYYHWXXXXXXXXXXSNDRSLYVQSFSSAPLSV 30
           WQ Y + W           ++ S YV   +    S+
Sbjct: 95  WQQYPWQWGLGICKLRAYVSETSSYVSVLTIVAFSI 130


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 188 TYRFDS-VRAGVNYMLKRIPLISD 256
           +Y F+  +  G NYM  R+P   D
Sbjct: 319 SYPFEEDINEGSNYMQTRVPAWCD 342


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 218 HQLVHYRTCMSPNT 177
           +QL+ Y  C +P T
Sbjct: 403 NQLIRYTRCENPKT 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,103
Number of Sequences: 438
Number of extensions: 956
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)