Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L20
(191 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 28 0.80
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 27 1.4
AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical ... 27 1.8
U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protei... 26 4.3
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 26 4.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 26 4.3
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 26 4.3
BX677430-1|CAI79176.1| 340|Caenorhabditis elegans Hypothetical ... 25 5.6
AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical ... 25 5.6
AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical ... 25 5.6
AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical ... 25 5.6
Z81102-6|CAB03207.2| 571|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z69659-7|CAA93488.2| 571|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical pr... 25 9.8
U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical pr... 25 9.8
U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical pr... 25 9.8
U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical pr... 25 9.8
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 25 9.8
AF078786-3|AAC26943.2| 384|Caenorhabditis elegans Hypothetical ... 25 9.8
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 25 9.8
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 0.80
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 164 YLRGTIPPASSLPRGAPPPRPI 99
Y PPA + P+G PPP P+
Sbjct: 233 YQNSPEPPAQAGPKGVPPPAPL 254
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 155 GTIPPASSLPRGAPPP 108
GTIP A P GAPPP
Sbjct: 339 GTIPRARLAPNGAPPP 354
>AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical
protein M04F3.5 protein.
Length = 652
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 42 GSTCSGSLRQRSVRATVPA 98
G +C GS+R S RAT PA
Sbjct: 237 GYSCMGSIRDLSTRATTPA 255
>U00066-9|AAA50743.3| 780|Caenorhabditis elegans Mediator protein
15, isoform a protein.
Length = 780
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -1
Query: 155 GTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAP 42
G I P S P G P P P + ++ PA G P
Sbjct: 176 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQP 213
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -1
Query: 155 GTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAP 42
G I P S P G P P P + ++ PA G P
Sbjct: 173 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQP 210
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -1
Query: 155 GTIPPASSLPRGAPPPRPIGW 93
G PP P G PPP + W
Sbjct: 1597 GMPPPGPPPPNGGPPPPSVEW 1617
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 143 PASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPRA 36
P P P P P+ GS + APA AP A
Sbjct: 245 PVEQAPVAVPAPAPVAAPDVECGSAAPAPAAAAPAA 280
>BX677430-1|CAI79176.1| 340|Caenorhabditis elegans Hypothetical
protein VB0395L.1 protein.
Length = 340
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 46 APVAGAYDRDPYAQQYQPM 102
AP AGAYD+ Q Y P+
Sbjct: 121 APTAGAYDKSTGVQAYIPL 139
>AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical
protein W04B5.3c protein.
Length = 353
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = -1
Query: 155 GTIPPASSLPRGAP----PPRPIG 96
GT+PP +S+P P PP P G
Sbjct: 243 GTLPPQTSMPSAPPITQAPPTPAG 266
>AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3a protein.
Length = 426
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = -1
Query: 155 GTIPPASSLPRGAP----PPRPIG 96
GT+PP +S+P P PP P G
Sbjct: 243 GTLPPQTSMPSAPPITQAPPTPAG 266
>AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3b protein.
Length = 426
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = -1
Query: 155 GTIPPASSLPRGAP----PPRPIG 96
GT+PP +S+P P PP P G
Sbjct: 243 GTLPPQTSMPSAPPITQAPPTPAG 266
>Z81102-6|CAB03207.2| 571|Caenorhabditis elegans Hypothetical
protein F07C6.4c protein.
Length = 571
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 158 RGTIPPASSLPRGAPPPRP 102
RG++PP SS GA P P
Sbjct: 508 RGSLPPYSSATMGAQSPAP 526
>Z81102-4|CAB03204.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 158 RGTIPPASSLPRGAPPPRP 102
RG++PP SS GA P P
Sbjct: 576 RGSLPPYSSATMGAQSPAP 594
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 161 LRGTIPPASSLPRGAPPPRP 102
L+G + S+P G PPP P
Sbjct: 562 LKGAVAGLKSVPGGPPPPPP 581
>Z69659-7|CAA93488.2| 571|Caenorhabditis elegans Hypothetical
protein F07C6.4c protein.
Length = 571
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 158 RGTIPPASSLPRGAPPPRP 102
RG++PP SS GA P P
Sbjct: 508 RGSLPPYSSATMGAQSPAP 526
>Z69659-6|CAA93486.2| 639|Caenorhabditis elegans Hypothetical
protein F07C6.4b protein.
Length = 639
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 158 RGTIPPASSLPRGAPPPRP 102
RG++PP SS GA P P
Sbjct: 576 RGSLPPYSSATMGAQSPAP 594
>Z73103-5|CAA97422.1| 380|Caenorhabditis elegans Hypothetical
protein C08F8.6 protein.
Length = 380
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 83 RNSTSLWDAGAERRAVENSP 142
RN T + D G E+RA+ P
Sbjct: 224 RNMTEIQDVGNEKRAIRRDP 243
>U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical
protein W08A12.1a protein.
Length = 501
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 74 IRTRNSTSLWDAGAERRAVENSPEGWSRGGTSANY 178
I+ RN + D G + +SPE W R NY
Sbjct: 186 IKDRNVLIICDRGCMDPSAYSSPEDWQRMLKDLNY 220
>U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical
protein W08A12.1b protein.
Length = 444
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 74 IRTRNSTSLWDAGAERRAVENSPEGWSRGGTSANY 178
I+ RN + D G + +SPE W R NY
Sbjct: 129 IKDRNVLIICDRGCMDPSAYSSPEDWQRMLKDLNY 163
>U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical
protein W08A12.1c protein.
Length = 438
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 74 IRTRNSTSLWDAGAERRAVENSPEGWSRGGTSANY 178
I+ RN + D G + +SPE W R NY
Sbjct: 123 IKDRNVLIICDRGCMDPSAYSSPEDWQRMLKDLNY 157
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 149 IPPASSLPRGAPPPRPIG 96
+ P LP GAPPP P+G
Sbjct: 29 VTPIMPLPYGAPPP-PVG 45
>AF078786-3|AAC26943.2| 384|Caenorhabditis elegans Hypothetical
protein M01G5.3 protein.
Length = 384
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 146 PPASSLPRGAPPPRPIG 96
PP L RGAPPP P G
Sbjct: 364 PPTEPLLRGAPPP-PTG 379
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 146 PPASSLPRGAPPPRPIGWYCCAYGSLS*APATGA 45
PPA + GAPPP +YG APA GA
Sbjct: 43 PPAPACGGGAPPPPAYAAPAPSYG----APAGGA 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,346,758
Number of Sequences: 27780
Number of extensions: 74723
Number of successful extensions: 440
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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