Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L19
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   1.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   1.9  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    24   3.2  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    23   7.5  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   7.5  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 73  QLCLV*WETIRRQAMLPRRR*KVEYNNLI**NTN 174
           Q+CL   +TIR   ++P+++  V+ NN+I  NT+
Sbjct: 668 QVCLAEIKTIR-PGLVPKKQFSVDQNNVISDNTD 700


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 126 PWQHGLPPD 100
           PWQH LPPD
Sbjct: 831 PWQHLLPPD 839


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 120 QHGLPPDGFPS 88
           +HG+ PDGFP+
Sbjct: 27  EHGIGPDGFPT 37


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = +3

Query: 84  CVMGNHPEAS---HAAKEALKSR 143
           C   NHPE+S   H+ K+++++R
Sbjct: 85  CTKTNHPESSSSRHSKKKSMENR 107


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  QLHLWPQLCLV*WETIRRQAMLPRRR 132
           +LH + +L  + W T+R  A+L   R
Sbjct: 67  RLHFYKKLFTILWLTVRTVALLSHAR 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,338
Number of Sequences: 5004
Number of extensions: 5135
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)