Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L18
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 150 6e-38
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 88 3e-19
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 87 8e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 4e-14
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 0.69
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 0.91
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 1.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 1.6
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 1.6
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 1.6
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 2.8
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 3.7
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 8.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 150 bits (363), Expect = 6e-38
Identities = 67/102 (65%), Positives = 77/102 (75%)
Frame = +2
Query: 11 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 190
A+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+
Sbjct: 63 AVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRR 122
Query: 191 EAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 316
EAE+CD LQGFQ KIREEYPDR+M
Sbjct: 123 EAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMM 164
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 87.8 bits (208), Expect = 3e-19
Identities = 36/71 (50%), Positives = 52/71 (73%)
Frame = +2
Query: 11 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 190
+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +R+
Sbjct: 69 SIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRR 128
Query: 191 EAESCDCLQGF 223
A++C LQGF
Sbjct: 129 MADNCSGLQGF 139
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 86.6 bits (205), Expect = 8e-19
Identities = 36/71 (50%), Positives = 50/71 (70%)
Frame = +2
Query: 11 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRK 190
+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D +R+
Sbjct: 65 SIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRR 124
Query: 191 EAESCDCLQGF 223
A++C LQGF
Sbjct: 125 IADNCSGLQGF 135
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 70.9 bits (166), Expect = 4e-14
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Frame = +2
Query: 11 AILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVV 184
AIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D++
Sbjct: 64 AILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMI 122
Query: 185 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIM 316
+EA+ D L+GF ++ + YP +I+
Sbjct: 123 DREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKII 166
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 0.69
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 210 VYKD-SNSHTPSEAVLAPVWAPFSSLKY 290
VYK S HT S L +W PFS L Y
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSELHY 265
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 0.91
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 59 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 160
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 128 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 217
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 1.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 201 DSASLRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 64
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 1.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 80 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 211
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 1.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 117 PAPDCPKTKLSGRKICPKGPERTESMVPGSRS 22
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 2.8
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 225 WNPCKQSHDSASLRTTSKT----ESTSSAPSV*CPLAQLLPAPDCPKTKLSG 82
++P +S D+ S RT S + TSS PS AQLL P K +G
Sbjct: 355 FSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQVLSPKPNG 406
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 57 RDPSDRSSAPTTSFSDSPAPVTTGLRDT 140
+DPSD S+PT S +P+ T L+ T
Sbjct: 19 QDPSDAQSSPTFVPSANPSLTTPWLQTT 46
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 195 QSHVIVYKDSNSHTPSEAVLAPVWAPF 275
+ HVI+Y++ + SE+V V+ F
Sbjct: 286 KKHVIIYENKEGSSSSESVYEDVFEDF 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,259
Number of Sequences: 5004
Number of extensions: 20280
Number of successful extensions: 86
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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