Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L18
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.29 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   1.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   2.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.29
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 161 VDSVLDVVRKEAESCDCLQG 220
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 183 FARKQSHVIVYKDSNSHTP 239
           FA   SH I+Y  +  H P
Sbjct: 254 FAGLHSHTIIYLSAKGHRP 272


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 133 GTLHGRC*ASRFRLRRSS 186
           GTL+GRC      L RS+
Sbjct: 551 GTLYGRCKREGIELSRSN 568


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 112 AGLSENEVVGAEDLSE 65
           AGL+E EVV A+ ++E
Sbjct: 62  AGLTEEEVVLAKTIAE 77


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 217 RIPTHTLPRRRYWLRYGHPS 276
           R+  H LPR     RY  PS
Sbjct: 343 RVFIHVLPRLLVMRRYNTPS 362


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 108 DCPKTKLSGRKICPKGPERTESMVPGSRSTRMAPS 4
           +C +  LS RKI      R       S   R +PS
Sbjct: 5   ECDRKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPS 39


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -1

Query: 100  ENEVVGAEDLSEGSRADRVHGAGLEVDED 14
            E+    +  L   SR   VH  G + D D
Sbjct: 1411 EDSTRDSTKLDRSSREREVHNGGQQEDRD 1439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,548
Number of Sequences: 438
Number of extensions: 1456
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)