Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L17
(179 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 2.3
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 23 4.0
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 23 4.0
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 23 4.0
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 23 5.3
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 23 5.3
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 23 7.1
SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces... 23 7.1
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 23 7.1
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 22 9.3
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 22 9.3
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom... 22 9.3
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 22 9.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 22 9.3
>SPAC23H4.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 97
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 39 KXESSKLHFDDKERYERMPF 98
K ES+ LH+D + MPF
Sbjct: 62 KPESNSLHYDTMHKQHAMPF 81
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 146 DNVLFIFVERITSSFDKRHTLVAL 75
DN LF+ ER TS D R L L
Sbjct: 312 DNTLFLDKERATSLNDMRSMLAGL 335
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 23.4 bits (48), Expect = 4.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 177 YFECIHKWLFR*RSFHICR 121
+F C+ WL R ++ ICR
Sbjct: 333 HFHCLRNWLERQQTCPICR 351
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 179 FILSVSINGFFDNVLFIFVERITSSFDKRHTLVAL 75
F++S+SI FD V+F ++ S D H + L
Sbjct: 111 FVISISIVCIFDLVIFGCLQYNMVSMDDLHVMQRL 145
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 120 FDKYEKNVIEKAI 158
FD YEKNV +K I
Sbjct: 40 FDDYEKNVSDKTI 52
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 23.0 bits (47), Expect = 5.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 48 SSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 143
S K DD++R +PF T D + K NV
Sbjct: 480 SPKTVRDDQKRLFELPFTCTFIDVYAKESGNV 511
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 94 LLSKLDVIRSTNMKRTLSKKPFMD 165
+ SKL+ I +T K LSK P D
Sbjct: 279 IFSKLEAIVATGAKVVLSKLPIGD 302
>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 116 YVRQI*KERYRKSHLWI 166
+V+Q+ KE Y+K + WI
Sbjct: 91 FVQQVVKEFYKKPNKWI 107
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 45 ESSKLHFDDKER 80
ES K+HF DK+R
Sbjct: 372 ESVKIHFQDKQR 383
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 134 KERYRKSHLWIHSK 175
K YRKSHL IH +
Sbjct: 62 KAFYRKSHLKIHKR 75
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 22.2 bits (45), Expect = 9.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 66 DDKERYERMPFVKTGCDTFDKYEKNVIEKAIYGYTQNK 179
+++ER ER + + + D E+ V+EKA +NK
Sbjct: 458 EEEERLEREGYYDSDQEIEDADEEEVLEKASRIREKNK 495
>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 22.2 bits (45), Expect = 9.3
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2
Query: 86 AYAFCQNWM 112
AY FC+NW+
Sbjct: 8 AYQFCKNWL 16
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 105 TGCDTFDKYEKNVIEK 152
T CDT +EKN EK
Sbjct: 98 TKCDTTHDFEKNCSEK 113
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 33 KLKXESSKLHFDDKERY 83
KLK +SS F+D +RY
Sbjct: 114 KLKIDSSNPKFNDTQRY 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,825
Number of Sequences: 5004
Number of extensions: 9955
Number of successful extensions: 39
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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