Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L16
         (318 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.14 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   0.58 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   1.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   1.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   1.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   2.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   4.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   4.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    19   9.5  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 176 GDRLPGSHYATYTC 217
           GDR  G HY  Y+C
Sbjct: 90  GDRASGKHYGVYSC 103


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
          protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 0.58
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 22 TPGPVPTPADP 54
          TPG VPTP+ P
Sbjct: 56 TPGDVPTPSSP 66


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 250 VETRWAASWRYAGVGRVVGAW 188
           ++++W A W +A +  V   W
Sbjct: 252 IDSQWLAHWAFAPIRWVAKLW 272


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 176 GDRLPGSHYATYTC 217
           GDR  G HY   TC
Sbjct: 192 GDRASGYHYNALTC 205


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -1

Query: 192 PGSRSPGQRAVTPDEQAAAAHSRPHPCPRF 103
           P  + P      P +    AH  PH C +F
Sbjct: 96  PKLQEPQPSQHCPRKHGYFAHEEPHICDKF 125



 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 88  YNDDAESWAWVRAAVRGGC 144
           YND A   +W   A + GC
Sbjct: 144 YNDKAGICSWPDEAKKKGC 162


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 139 RRAQPPAPMPKIRRH 95
           RR +P  P P I RH
Sbjct: 325 RRNEPKRPRPNIDRH 339



 Score = 19.4 bits (38), Expect = 9.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 31  PVPTPADPDFRISGVLR 81
           P+P   D    ISGVLR
Sbjct: 120 PMPITTDNVAAISGVLR 136


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 132 HSRPHPCPRFGV 97
           ++R HP P FGV
Sbjct: 173 YARYHPYPNFGV 184


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 16  ELTPGPVPTP 45
           E+ P PVPTP
Sbjct: 390 EIPPEPVPTP 399


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 309 FRRIASLKCGNGS 271
           FR+  S  CGNG+
Sbjct: 39  FRKQNSSSCGNGN 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,483
Number of Sequences: 336
Number of extensions: 1617
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5942776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)