Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L16
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    24   6.4  
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    24   6.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   6.4  

>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 427

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 71 PDILKSGSAGVGTGPGVSS 15
          P ++ + SAG  +GP VSS
Sbjct: 32 PTVIATRSAGASSGPAVSS 50


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 109 WAWVRAAVRGGCLL 150
           WAW+ A+ +G  LL
Sbjct: 70  WAWIEASTKGAVLL 83


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 174 GQRAVTPDEQAAAAHSRPHPCP 109
           G R   PDE A+ + S  HP P
Sbjct: 819 GGRPALPDEMASPSSSIGHPLP 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,670
Number of Sequences: 5004
Number of extensions: 22386
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)