Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L14
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 56 1e-09
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 56 1e-09
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 0.69
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 26 1.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 2.1
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 25 2.8
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 2.8
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.7
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 21 6.1
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 23 8.5
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 23 8.5
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 23 8.5
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 23 8.5
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 56.4 bits (130), Expect = 1e-09
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +1
Query: 154 IKLFGRWSCYDVQVSDLSLQDYISVKEKYAKYLPHSAGRYAHKRFRRAQCPIVER 318
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFR+A+C IVER
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVER 70
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 56.4 bits (130), Expect = 1e-09
Identities = 28/55 (50%), Positives = 39/55 (70%)
Frame = +1
Query: 154 IKLFGRWSCYDVQVSDLSLQDYISVKEKYAKYLPHSAGRYAHKRFRRAQCPIVER 318
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFR+A+C IVER
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVER 70
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 0.69
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 249 IFCILLFYRNIILQRQVRYLN 187
I C+L+ RNI L+ Q+ YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 1.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 139 ADIPEIKLFGRWSCYDVQVSDLSLQDYISVKEKYAKYLPHSAGRYA 276
ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 9 ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 112 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDLSLQDYISVKEKYAKYL 252
V+NM + +P I KL + + + ++ L ++ ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 213 LQRQVRYLNVITTPSPKKFDFGNISRLW 130
LQ+ ++YL + P P F + SR W
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW 58
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 2.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 83 KKSPTRAAWLWTTCHYHSRLIF 148
K +P R LW +CH++ +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 216 ILQRQVRYLNVITTPSPKKFDFGNISRL 133
IL+++ + +I S +KFDF N R+
Sbjct: 3 ILEKKNIFFKIIHIKSSRKFDFSNAIRI 30
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 21.0 bits (42), Expect(2) = 6.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = +2
Query: 107 WLWTTCHYHSRLIFPKSNFLGDGVV 181
W + H ++FP S + +G+V
Sbjct: 257 WRCSDFLLHQNILFPPSTLVQNGIV 281
Score = 21.0 bits (42), Expect(2) = 6.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 206 LCRIIFR*KRSMQNIYHILLAGTLTNDSVELSALLW 313
L R +FR RS N L + ++S+ S LW
Sbjct: 311 LRRFVFRSPRSASNYEFSNLRRLMVSESLYSSKSLW 346
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQF 37
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQF 37
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 226 PKYNPAKTSPILERHNNSIAQK 161
P Y+P K+S ++HN SI K
Sbjct: 20 PSYSPQKSSFEEKKHNFSITNK 41
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQF 37
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,495
Number of Sequences: 5004
Number of extensions: 26487
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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