Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L14
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.29 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.39 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   0.39 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   2.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   3.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.29
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTN 31
           +V NH  ++ + + PVL  H +H   +F +
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKFAD 374


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.39
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQF 37
           +V NH  ++ + + PVL  H +H   +F
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKF 372


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 0.39
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQF 37
           +V NH  ++ + + PVL  H +H   +F
Sbjct: 56  IVLNHPGQISNGYTPVLDCHTAHIACKF 83


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 304 GTELYGIVCERTCQQNVVNILHTSLL 227
           G  + GI+C++T   +  ++LH  +L
Sbjct: 94  GELVMGILCKKTLGTSAGSLLHICML 119


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 228 YRNIILQRQVRYLNVITTPSPKKFDFGN 145
           Y N  L   + Y+  I  P P    +GN
Sbjct: 321 YNNKKLYYNINYIEQIPVPVPVPIYYGN 348


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 256 VVNILHTSLLPKYNPAKTSPIL 191
           V N+L    +P+ +PA T+  L
Sbjct: 85  VANLLRLFHIPQISPASTAKAL 106


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 256 VVNILHTSLLPKYNPAKTSPIL 191
           V N+L    +P+ +PA T+  L
Sbjct: 175 VANLLRLFHIPQISPASTAKAL 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,803
Number of Sequences: 438
Number of extensions: 1834
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)