Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L13
(157 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 1.3
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 1.8
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 24 3.1
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 24 3.1
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 24 3.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 3.1
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 23 4.1
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ... 23 5.4
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 23 5.4
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 23 5.4
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 23 7.2
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 22 9.5
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 22 9.5
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 22 9.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 22 9.5
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 124 CMTSLVETYYGRVQIHTTIAKIRSARTAIVQ 32
CM+ LV YG T IAK R IVQ
Sbjct: 630 CMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQ 660
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 49 ARFLFWQWSYVFGHVHSKSLLN 114
A L W Y+FG + S+SLLN
Sbjct: 255 AEQLIWLSFYLFGAIASESLLN 276
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 86 PNTYDHCQNKKRAYGHCSVV 27
P+ C N R YGH S++
Sbjct: 321 PDMITECLNAVRKYGHVSII 340
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 23.8 bits (49), Expect = 3.1
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +2
Query: 71 GRMYLDTSIVSLY 109
G+MY+DT+++S Y
Sbjct: 127 GKMYVDTNVISTY 139
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 58 LFWQWSYVFGHVHSKSLLNLSCKQIKDFVNGHN 156
L W SY F + + K +L LS + V+G N
Sbjct: 151 LIWGMSYFFFNKNMKRMLYLSLHGLGKEVSGRN 183
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 152 CPLTKSLICLHDKFSRDLLWT 90
CP ++ L +F RD LW+
Sbjct: 1352 CPGSRQFTVLQSRFQRDHLWS 1372
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 7 WYRSW*HTTEQWPYARFLFWQWSY 78
+Y W H+ + PY + WQ +Y
Sbjct: 140 YYCIWSHSKKMLPYQALVNWQNAY 163
>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Pet191
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 85
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -3
Query: 152 CPLTKSLICLHDKFSRDLLWTCPNTYDHCQNKKRAYGHC 36
C L + + K +R+ L + C+N AYG C
Sbjct: 15 CLLHSDCMFVKKKSARECLKNKDELPEECKNLIEAYGEC 53
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 23.0 bits (47), Expect = 5.4
Identities = 5/18 (27%), Positives = 12/18 (66%)
Frame = +1
Query: 40 WPYARFLFWQWSYVFGHV 93
W ++ +FW W++++ V
Sbjct: 1247 WMFSIGVFWIWTFIYSEV 1264
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/44 (27%), Positives = 16/44 (36%)
Frame = -3
Query: 134 LICLHDKFSRDLLWTCPNTYDHCQNKKRAYGHCSVVCYHERYHC 3
L+ L + S + + D N K Y CS C Y C
Sbjct: 345 LLILSTENSNGVCYVETKNLDGETNLKDKYALCSTKCCKSEYRC 388
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 23.0 bits (47), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 35 NNGRTRASYFGNGRMYLDT--SIVSLY*TCHANKSKISSTDTI 157
N + S GN +Y + S SLY T ANK K +S+ T+
Sbjct: 348 NISKINISIAGNKELYGNATQSDPSLYSTWIANKHKTASSATV 390
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = +3
Query: 6 VVSFVVTYN*TMAVRALLILAMVVCIW 86
V F+ Y T ++ L++ + +C+W
Sbjct: 32 VAVFLGLYIGTKSIHCLILFFLAICLW 58
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 86 PNTYDHCQNKKRAYGHCSVVCYHER 12
P T H + K+ H +VC H R
Sbjct: 34 PTTVHHDERKESWRSHGFIVCLHIR 58
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/26 (26%), Positives = 13/26 (50%)
Frame = +1
Query: 70 WSYVFGHVHSKSLLNLSCKQIKDFVN 147
+ ++ GHV SK + ++ F N
Sbjct: 601 YDHLLGHVDSKFIFKTPSNSVRSFTN 626
>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 32 LNNGRTRASYFGNGRMYLDTSIVSLY 109
L NGRT + + + +L S+ S+Y
Sbjct: 75 LRNGRTEVRLYTHYKRHLPRSVNSIY 100
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 77 YDHCQNKKRAYGHCSVV 27
Y H QN ++ +G CS V
Sbjct: 1248 YAHSQNAEKIFGICSKV 1264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,668
Number of Sequences: 5004
Number of extensions: 11170
Number of successful extensions: 33
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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