Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L10
(360 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 155 3e-39
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 155 3e-39
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 46 2e-06
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 31 0.071
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 27 1.2
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 2.7
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 2.7
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 2.7
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 3.5
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 4.7
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 24 6.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 24 8.2
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 24 8.2
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 24 8.2
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 155 bits (375), Expect = 3e-39
Identities = 71/90 (78%), Positives = 81/90 (90%)
Frame = +3
Query: 57 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 236
K+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A G
Sbjct: 54 KIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKG 113
Query: 237 DIPGVRFEVVKVGNVSLLALYKEEKERPRS 326
DIPGVRF+VVKV V L AL+ E+KE+PR+
Sbjct: 114 DIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 32.7 bits (71), Expect = 0.018
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +2
Query: 2 HEANPFGGASHAKGIVLXK 58
++++PFGG+SHAKGIV+ K
Sbjct: 36 YKSSPFGGSSHAKGIVVEK 54
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 155 bits (375), Expect = 3e-39
Identities = 71/90 (78%), Positives = 81/90 (90%)
Frame = +3
Query: 57 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 236
K+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A G
Sbjct: 54 KIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKG 113
Query: 237 DIPGVRFEVVKVGNVSLLALYKEEKERPRS 326
DIPGVRF+VVKV V L AL+ E+KE+PR+
Sbjct: 114 DIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 32.7 bits (71), Expect = 0.018
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +2
Query: 2 HEANPFGGASHAKGIVLXK 58
++++PFGG+SHAKGIV+ K
Sbjct: 36 YKSSPFGGSSHAKGIVVEK 54
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 46.0 bits (104), Expect = 2e-06
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +3
Query: 66 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 245
V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+ G GR D P
Sbjct: 61 VKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRG-GR----AQDCP 112
Query: 246 GVRFEVVK 269
GV++ VV+
Sbjct: 113 GVQYHVVR 120
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 30.7 bits (66), Expect = 0.071
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -3
Query: 307 SSLYRARSDTFPTLTTSNLTPGMSPTAWPLRPNPATNTSSFSSM 176
S++Y + + +FP T +++ G S L P PA++TSSFS++
Sbjct: 160 STIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 319 GLSFSSLYRARSDTFPTLTTSNLTPGMSPTAWPLRPNP 206
G+ FSSL + R +TF NL M+ T + L NP
Sbjct: 873 GVEFSSLAKERINTFIKQGFGNLPICMAKTQYSLSHNP 910
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 2.0
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = -3
Query: 277 FPTLTTSNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHL 98
+PT +T+N S +W + ATNTSS SS + N+ F F +S +
Sbjct: 152 YPTNSTTN-----SSISWNSSTSAATNTSSSSSSSSQSSVVSVNSEIFSYFGLSQQYVNY 206
Query: 97 RMAEFGCLASTP 62
+ C+ TP
Sbjct: 207 STSRL-CVVGTP 217
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 281 HVSYLNHLKSDSRNVTNSVAFTTESRN*HLIV 186
HV +LNH+ N N +A + E + LIV
Sbjct: 47 HVDFLNHIHLLLGNYNNDLASSIEKKKSELIV 78
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 2.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 304 SLYRARSDTFPTLTTSNLTPGMSPTAWP 221
S Y+ + DT+ T T N PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 2.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 180 EENDEVLVAGFGRKGHAVGDIPGVRFEVVKVGNV 281
+ LV + G+A+ +PG+ FE++ +V
Sbjct: 80 DSKSSTLVVADPKLGNAINKLPGLEFEIISDSSV 113
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 295 RARSDTFPTLTTSNLT-PGMSP 233
RA SDTFP L TS+ PG P
Sbjct: 220 RAGSDTFPDLNTSSSNQPGGEP 241
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 4.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 153 PRDGCLNHIEENDEVLVAGFGRKGHAVG 236
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 24.2 bits (50), Expect = 6.2
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +3
Query: 15 PSVVHLMLRASSSXKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 194
P H+ S G PNSA R C+ ++ K V+ +P I++N
Sbjct: 271 PPSFHMQTTCDSCGGTGTTIP-PNSACRSCMGSGTVRERKTVSIDIPPG-----IDDNTV 324
Query: 195 VLVAGFG 215
+ V G G
Sbjct: 325 LRVMGAG 331
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.8 bits (49), Expect = 8.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 278 VSYLNHLKSDSRNVTNSVAFTT 213
VSY++ SDS + TN+V TT
Sbjct: 183 VSYVSSEPSDSSSSTNTVILTT 204
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 274 PTLTTSNLTPGMSPTAWPLR 215
P +TT NLT G W LR
Sbjct: 465 PCMTTYNLTMGWENVIWGLR 484
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 133 LPFLMSCTRTHLRMAEFGCLAST 65
L L+SC +T+ A FGC T
Sbjct: 133 LSSLLSCMKTYRATALFGCSTDT 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,614
Number of Sequences: 5004
Number of extensions: 28875
Number of successful extensions: 96
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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