Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L10
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 167 2e-42
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 167 2e-42
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 83 5e-17
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 53 8e-08
06_03_0416 + 20568087-20568702,20568767-20570313 29 1.1
01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391 29 1.5
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 28 1.9
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 28 1.9
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 28 1.9
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 3.4
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 27 3.4
06_03_1146 - 28004896-28005554,28005664-28005844 27 4.4
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044 26 7.7
04_03_1015 - 21734381-21736534 26 7.7
01_06_0536 + 30068881-30070383 26 7.7
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 167 bits (406), Expect = 2e-42
Identities = 75/90 (83%), Positives = 84/90 (93%)
Frame = +3
Query: 57 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 236
K+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVG
Sbjct: 53 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVG 112
Query: 237 DIPGVRFEVVKVGNVSLLALYKEEKERPRS 326
DIPGVRF+VVKV VSLLAL+KE+KE+PRS
Sbjct: 113 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 14 PFGGASHAKGIVLXK 58
PF G+SHAKGIVL K
Sbjct: 39 PFAGSSHAKGIVLEK 53
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 167 bits (406), Expect = 2e-42
Identities = 75/90 (83%), Positives = 84/90 (93%)
Frame = +3
Query: 57 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 236
K+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVG
Sbjct: 223 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVG 282
Query: 237 DIPGVRFEVVKVGNVSLLALYKEEKERPRS 326
DIPGVRF+VVKV VSLLAL+KE+KE+PRS
Sbjct: 283 DIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 163 bits (397), Expect = 3e-41
Identities = 73/88 (82%), Positives = 82/88 (93%)
Frame = +3
Query: 57 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVG 236
K+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVG
Sbjct: 53 KIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVG 112
Query: 237 DIPGVRFEVVKVGNVSLLALYKEEKERP 320
DIPGVRF+VVKV VSLLAL+KE+KE+P
Sbjct: 113 DIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 14 PFGGASHAKGIVLXK 58
PF G+SHAKGIVL K
Sbjct: 39 PFAGSSHAKGIVLEK 53
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 14 PFGGASHAKGIVLXK 58
PF G+SHAKGIVL K
Sbjct: 209 PFAGSSHAKGIVLEK 223
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 83.4 bits (197), Expect = 5e-17
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +3
Query: 57 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 209
K+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 124 KIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
Score = 30.3 bits (65), Expect = 0.48
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 14 PFGGASHAKGIVLXKSWR*SQAAEFSHS*VCSC 112
PF G+SHAKGIVL K A+ +S +C C
Sbjct: 110 PFAGSSHAKGIVLEKI---GIEAKQPNSAICKC 139
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 52.8 bits (121), Expect = 8e-08
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 189 DEVLVAGFGRKGHAVGDIPGVRFEVVK 269
DEVL++GFG KGHAVGDI GVRFEVVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 111 HEHTYEWLNSAAWLQRQLFXRTMPLA 34
H Y+W+N +AW+ +F T P A
Sbjct: 250 HMRLYQWINYSAWVPSDIFDITDPCA 275
>01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391
Length = 122
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 298 YRARSDTFPTLTTSNLTPGMSPTAWPLRPNPAT 200
YR FP + ++ P +P+ P PNPAT
Sbjct: 48 YRGEIIGFPDVQANSSQPASTPSTAPSTPNPAT 80
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 266 NHLKSDSRNVTNSVAFTTESRN*HLIVLLNVVEATITRHECCHFLAVLNELY 111
+H+K V NS+ F + I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 271 TLTTSNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 140
TL+ NL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 274 PTLTTSNLTPGMSPTAWPLRPNPATNTSS 188
PT TT+ TP M+P P P+P TN ++
Sbjct: 308 PTTTTTP-TPFMNPVTAPTMPSPVTNPAT 335
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -3
Query: 307 SSLYRARSDTFPTLTTSNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNA-VTFL 131
S+ Y +S +F +L + +P + NP + W R+ S + A T+L
Sbjct: 114 SNFYAGKSKSFTSLAEATASPAAAANELAKPENPFNKRRRILATWSRRASCSSLATATYL 173
Query: 130 PFLMS 116
P L++
Sbjct: 174 PPLLA 178
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 271 TLTTSNLTP-GMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRT 104
T T+S+ P SP+ P+P T + S++ R P RG+ L +L+ T
Sbjct: 17 TSTSSSSPPDSASPSFSFYHPSPPNYTLAVSNLSCRDPRRGSGGAGLLSWLLGSFST 73
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 274 PTLTTSNL--TPGMSPTAWPLRPNPATNTSSFSS 179
P+L S + TP SP+ P+ P PA TS+ SS
Sbjct: 174 PSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPSS 207
>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
Length = 578
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 126 NGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGH-AVGDIPGVRF 257
N KK + R+G L+++ N+E + + F R G A+ D+ R+
Sbjct: 471 NTKKDVMVLQREGILDNLLSNEEEVASFFNRLGRCALVDVSNHRY 515
>04_03_1015 - 21734381-21736534
Length = 717
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 84 NSAIRKCVRVQLIKNGKKVTAFVPRDG 164
+SA+ C + L+ +GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
>01_06_0536 + 30068881-30070383
Length = 500
Score = 26.2 bits (55), Expect = 7.7
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 281 HVSYLNHLKSDSRNVTNSVAFTTESRN*HLIVLLNVVEATITRHECCHF-LAVLNELYTN 105
H+S L SD+ T+ + + SRN ++VV AT + H+ LA L+ + +N
Sbjct: 391 HISVLGEHPSDAYTKTSGLTYIWTSRN------MSVVAATYSLHQASSAQLADLSPILSN 444
Query: 104 TLTNG 90
+ G
Sbjct: 445 DVLTG 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,724,325
Number of Sequences: 37544
Number of extensions: 211289
Number of successful extensions: 661
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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