Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L08
         (220 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   0.16 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   6.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    19   8.1  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.2 bits (50), Expect = 0.16
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 87  YDHCQNKKRAYGHCSVVCYHERYTKYSSC 1
           +D    + RA+ HCSV     +  KY  C
Sbjct: 82  FDWVYYESRAHIHCSVKSESSQAAKYGGC 110


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 103 HSKSLLNLSCKQIKDFVNGHNYR 171
           H  S++ L+  Q+K +   H Y+
Sbjct: 72  HLASIIRLTPTQVKIWFQNHRYK 94


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 91   IGHVHSKSLLNLSCKQIKD 147
            I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 91   IGHVHSKSLLNLSCKQIKD 147
            I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 91   IGHVHSKSLLNLSCKQIKD 147
            I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 91   IGHVHSKSLLNLSCKQIKD 147
            I H+ + + LNL C + K+
Sbjct: 1353 IAHILASTELNLCCTKKKE 1371


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
          protein.
          Length = 475

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 42 VVCYHERYTKY 10
          VVCYH  ++ Y
Sbjct: 22 VVCYHGIWSTY 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,312
Number of Sequences: 336
Number of extensions: 975
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 45
effective length of database: 107,465
effective search space used:  2901555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)