Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L04
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 101 6e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 98 6e-22
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 27 0.88
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 2.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 2.7
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 2.7
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 25 3.6
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 25 3.6
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 3.6
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 4.7
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 4.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 24 8.2
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 24 8.2
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 24 8.2
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 101 bits (241), Expect = 6e-23
Identities = 44/91 (48%), Positives = 67/91 (73%)
Frame = +3
Query: 15 GRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRK 194
G++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + +K
Sbjct: 93 GKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKK 152
Query: 195 TCYAFHTQVRAIRKKMCEIVTREVTSSELRE 287
T YA +Q+RAIR+KM +++ + +S +RE
Sbjct: 153 TTYAQSSQIRAIRQKMFQVIQNQTSSCSMRE 183
Score = 49.6 bits (113), Expect = 2e-07
Identities = 21/45 (46%), Positives = 34/45 (75%)
Frame = +1
Query: 277 SFVKVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 411
S ++V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ +
Sbjct: 180 SMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHD 224
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 97.9 bits (233), Expect = 6e-22
Identities = 41/91 (45%), Positives = 65/91 (71%)
Frame = +3
Query: 15 GRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRK 194
G++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +K
Sbjct: 93 GKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKK 152
Query: 195 TCYAFHTQVRAIRKKMCEIVTREVTSSELRE 287
T YA +Q+RAI +KM +++ + ++E
Sbjct: 153 TTYAQSSQIRAIHQKMFQVIQNQANGCSMKE 183
Score = 52.0 bits (119), Expect = 4e-08
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +1
Query: 277 SFVKVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 411
S ++V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ +
Sbjct: 180 SMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHD 224
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 27.5 bits (58), Expect = 0.88
Identities = 11/51 (21%), Positives = 27/51 (52%)
Frame = -2
Query: 414 DFKTRPLQYFHLPNADITKWVDTVTRLFDILSDGVRNQLVHDLHEALNWSL 262
D+ RP +Y H+P ++ W + + +L+ R++ + + ++WS+
Sbjct: 211 DYSARPRKYAHVPILNLCLWNHAYYKDYGLLN---RSRYIDTWFDCIDWSV 258
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 2.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 150 FCIGFTNKDTLSQRKTCY 203
FC G NKDT+ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 27 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 200
L + + + +T +++++ + N + K YV ++ G NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 24 VLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 128
V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 117 VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 3.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 151 SASVSPTRIRSANARHATLFIPKSAQSGKKCVKSSRAK*PV 273
SAS P R A A +F+PKS + K + SR + PV
Sbjct: 84 SASFQPVRALPVKAAGAAVFVPKSQE---KSLFLSRERTPV 121
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 3.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 170 QGYAQPTQDMLRFSYPSPRNQE 235
Q ++Q D F+YP RNQE
Sbjct: 263 QSWSQKAVDSYYFAYPKDRNQE 284
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 48 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 146
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 69 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYA 206
++ W L+ T GYV+R GFT+ + + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 4.7
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 193 RHATLFIPKSAQSGKKCVKSSRAK*PVQSFVKVVNKLIPDSIAKDIEKACHGIYPLRDVC 372
R T F+ AQ+ + V + V+ K+ ++ + +A ++ C GI +R+VC
Sbjct: 372 RDVTQFLACLAQASHEFVPPDALEPLVR---KIADEFVTSGVANEV--VCAGINAIREVC 426
Query: 373 IR 378
R
Sbjct: 427 AR 428
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 12 GGRNVLCNFHGMDLTTDKLRW 74
G + +CN+ G + TD L W
Sbjct: 918 GDADYICNYMGNEAWTDALEW 938
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 104 FNQCLPFLYHPSEFISGEV 48
FNQ + FL HP F S V
Sbjct: 410 FNQLIDFLKHPHGFTSSSV 428
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 24.2 bits (50), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 239 FFPDCADLGMKSVACLALAERIL 171
+ DC M SV CL L + +L
Sbjct: 20 YLVDCTSFSMNSVTCLRLMQLLL 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,099
Number of Sequences: 5004
Number of extensions: 34316
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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